Strain Fitness in Escherichia coli BW25113 around b2951
Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep C; time point 1 |
---|---|---|---|---|---|
remove | |||||
3,092,156 | - | -1.3 | |||
3,092,156 | - | -1.4 | |||
3,092,336 | - | yggR | b2950 | 0.22 | -1.6 |
3,092,338 | + | yggR | b2950 | 0.22 | +0.1 |
3,092,338 | + | yggR | b2950 | 0.22 | +0.7 |
3,092,357 | - | yggR | b2950 | 0.24 | -0.2 |
3,092,395 | + | yggR | b2950 | 0.28 | +0.3 |
3,092,398 | + | yggR | b2950 | 0.28 | -1.1 |
3,092,525 | - | yggR | b2950 | 0.41 | +0.6 |
3,092,671 | - | yggR | b2950 | 0.56 | +0.2 |
3,092,671 | - | yggR | b2950 | 0.56 | -1.5 |
3,092,780 | + | yggR | b2950 | 0.67 | +0.4 |
3,092,927 | + | yggR | b2950 | 0.82 | -0.8 |
3,092,927 | + | -0.3 | |||
3,092,930 | - | yggR | b2950 | 0.82 | +0.7 |
3,092,953 | + | yggR | b2950 | 0.85 | -0.2 |
3,093,045 | + | +0.1 | |||
3,093,052 | - | -0.3 | |||
3,093,052 | - | +0.2 | |||
3,093,325 | + | yggS | b2951 | 0.29 | -1.8 |
3,093,345 | + | yggS | b2951 | 0.32 | -2.7 |
3,093,345 | + | yggS | b2951 | 0.32 | +2.2 |
3,093,377 | + | yggS | b2951 | 0.36 | +0.8 |
3,093,416 | + | yggS | b2951 | 0.42 | +0.9 |
3,093,416 | + | yggS | b2951 | 0.42 | -2.1 |
3,093,416 | + | yggS | b2951 | 0.42 | -0.2 |
3,093,604 | + | yggS | b2951 | 0.69 | +0.9 |
3,093,604 | + | yggS | b2951 | 0.69 | +0.8 |
3,093,675 | + | yggS | b2951 | 0.79 | +1.5 |
3,093,729 | - | yggS | b2951 | 0.86 | +1.5 |
3,093,855 | - | -0.5 | |||
3,093,855 | - | -3.0 | |||
3,093,883 | + | +0.4 | |||
3,093,891 | - | -0.1 | |||
3,093,930 | - | yggT | b2952 | 0.16 | +1.6 |
3,093,930 | - | yggT | b2952 | 0.16 | +1.6 |
3,093,940 | - | yggT | b2952 | 0.17 | -3.3 |
3,094,022 | + | yggT | b2952 | 0.32 | +0.1 |
3,094,067 | - | yggT | b2952 | 0.40 | +0.8 |
3,094,089 | - | yggT | b2952 | 0.44 | -1.2 |
3,094,089 | - | yggT | b2952 | 0.44 | -0.2 |
3,094,290 | + | yggT | b2952 | 0.79 | +0.3 |
3,094,319 | + | yggT | b2952 | 0.84 | +0.3 |
3,094,324 | + | yggT | b2952 | 0.85 | -3.0 |
3,094,333 | + | yggT | b2952 | 0.87 | -0.1 |
3,094,333 | + | yggT | b2952 | 0.87 | +0.1 |
3,094,391 | - | -0.5 | |||
3,094,400 | + | +0.3 | |||
3,094,400 | + | +0.2 | |||
3,094,451 | + | yggU | b2953 | 0.16 | +0.5 |
3,094,451 | + | yggU | b2953 | 0.16 | +1.5 |
3,094,542 | + | yggU | b2953 | 0.47 | -3.6 |
3,094,775 | + | yggV | b2954 | 0.12 | +0.6 |
Or see this region's nucleotide sequence