Strain Fitness in Escherichia coli BW25113 around b2538

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
2,666,111	-				+1.6
2,666,203	-	hcaR	b2537	0.20	+0.6
2,666,213	+	hcaR	b2537	0.21	-0.9
2,666,213	+	hcaR	b2537	0.21	-0.3
2,666,216	-	hcaR	b2537	0.21	+1.2
2,666,269	-	hcaR	b2537	0.27	-0.5
2,666,334	-	hcaR	b2537	0.34	+0.7
2,666,359	+	hcaR	b2537	0.37	-0.5
2,666,361	+	hcaR	b2537	0.37	+0.8
2,666,389	-	hcaR	b2537	0.41	-0.1
2,666,389	-	hcaR	b2537	0.41	+0.5
2,666,551	+	hcaR	b2537	0.59	+0.4
2,666,563	+	hcaR	b2537	0.60	+0.0
2,666,824	+	hcaR	b2537	0.89	-0.1
2,666,839	-				-0.0
2,666,877	+				-0.2
2,666,877	+				+0.8
2,666,931	-				-0.8
2,667,028	-				-0.2
2,667,028	-				+0.3
2,667,079	+				+0.4
2,667,079	+				+0.2
2,667,364	-	hcaE	b2538	0.23	+0.2
2,667,364	-	hcaE	b2538	0.23	+0.7
2,667,536	+	hcaE	b2538	0.35	-0.7
2,667,646	-	hcaE	b2538	0.43	+0.2
2,667,730	-	hcaE	b2538	0.50	-1.6
2,667,827	-	hcaE	b2538	0.57	+0.9
2,667,880	-	hcaE	b2538	0.61	+0.4
2,667,930	-	hcaE	b2538	0.64	-1.3
2,667,956	+	hcaE	b2538	0.66	+1.6
2,668,118	-	hcaE	b2538	0.78	-0.3
2,668,174	-	hcaE	b2538	0.82	+0.6
2,668,253	+	hcaE	b2538	0.88	+2.0
2,668,253	+	hcaE	b2538	0.88	+2.3
2,668,363	+				-0.2
2,668,539	-	hcaF	b2539	0.24	+0.7
2,668,551	-	hcaF	b2539	0.27	-0.1
2,668,551	-	hcaF	b2539	0.27	+0.6
2,668,676	+	hcaF	b2539	0.51	-0.6
2,668,676	+	hcaF	b2539	0.51	+0.7
2,668,709	+	hcaF	b2539	0.57	+0.1
2,668,715	+	hcaF	b2539	0.58	-0.9
2,668,736	-	hcaF	b2539	0.62	+0.1
2,668,759	+	hcaF	b2539	0.67	+0.3
2,668,888	-				+0.9
2,668,888	-				+1.8
2,668,925	-				-0.6
2,668,932	-				-1.0
2,668,979	-	hcaC	b2540	0.15	+0.2
2,669,083	+	hcaC	b2540	0.48	-1.4
2,669,112	-	hcaC	b2540	0.57	-1.0
2,669,166	+	hcaC	b2540	0.74	-0.0
2,669,295	+				+0.1