Strain Fitness in Escherichia coli BW25113 around b2528

Experiment: Ying_Others16 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthscA and hscB are separated by 16 nucleotideshscB and iscA are separated by 95 nucleotidesiscA and iscU are separated by 16 nucleotidesiscU and iscS are separated by 27 nucleotides b2526: hscA - chaperone protein HscA (NCBI), at 2,655,107 to 2,656,957 hscA b2527: hscB - co-chaperone HscB (NCBI), at 2,656,974 to 2,657,489 hscB b2528: iscA - iron-sulfur cluster assembly protein (NCBI), at 2,657,585 to 2,657,908 iscA b2529: iscU - scaffold protein (NCBI), at 2,657,925 to 2,658,311 iscU b2530: iscS - cysteine desulfurase (NCBI), at 2,658,339 to 2,659,553 iscS Position (kb) 2657 2658Strain fitness (log2 ratio) -2 -1 0 1 2at 2656.964 kb on - strandat 2657.633 kb on - strand, within iscAat 2657.795 kb on - strand, within iscAat 2657.873 kb on - strand, within iscAat 2657.886 kb on - strandat 2658.370 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
remove
2,656,964 - -0.3
2,657,633 - iscA b2528 0.15 +0.2
2,657,795 - iscA b2528 0.65 +1.4
2,657,873 - iscA b2528 0.89 -2.7
2,657,886 - +1.5
2,658,370 + +2.4

Or see this region's nucleotide sequence