Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadA and pnuC are separated by 37 nucleotides pnuC and zitB overlap by 4 nucleotides
b0750: nadA - quinolinate synthetase (NCBI), at 781,308 to 782,351
nadA
b0751: pnuC - predicted nicotinamide mononucleotide transporter (NCBI), at 782,389 to 783,108
pnuC
b0752: zitB - zinc transporter ZitB (NCBI), at 783,105 to 784,046
zitB
Position (kb) 782
783
784 Strain fitness (log2 ratio) -2
-1
0
1
2 at 781.430 kb on - strand, within nadA at 781.430 kb on - strand, within nadA at 781.443 kb on + strand, within nadA at 781.456 kb on - strand, within nadA at 781.456 kb on - strand, within nadA at 781.456 kb on - strand, within nadA at 781.468 kb on + strand, within nadA at 781.708 kb on + strand, within nadA at 781.760 kb on - strand, within nadA at 781.847 kb on + strand, within nadA at 781.982 kb on - strand, within nadA at 782.171 kb on - strand, within nadA at 782.171 kb on - strand, within nadA at 782.226 kb on - strand, within nadA at 782.284 kb on + strand at 782.319 kb on + strand at 782.404 kb on + strand at 782.404 kb on + strand at 782.429 kb on - strand at 782.485 kb on + strand, within pnuC at 782.508 kb on - strand, within pnuC at 782.508 kb on - strand, within pnuC at 782.510 kb on + strand, within pnuC at 782.537 kb on - strand, within pnuC at 782.701 kb on + strand, within pnuC at 782.754 kb on + strand, within pnuC at 782.803 kb on + strand, within pnuC at 782.803 kb on + strand, within pnuC at 782.824 kb on + strand, within pnuC at 782.824 kb on + strand, within pnuC at 782.848 kb on - strand, within pnuC at 782.848 kb on - strand, within pnuC at 782.888 kb on - strand, within pnuC at 782.921 kb on + strand, within pnuC at 782.921 kb on + strand, within pnuC at 783.018 kb on - strand, within pnuC at 783.127 kb on - strand at 783.158 kb on + strand at 783.179 kb on - strand at 783.193 kb on - strand at 783.193 kb on - strand at 783.202 kb on + strand, within zitB at 783.202 kb on + strand, within zitB at 783.243 kb on - strand, within zitB at 783.270 kb on + strand, within zitB at 783.270 kb on + strand, within zitB at 783.317 kb on + strand, within zitB at 783.341 kb on + strand, within zitB at 783.352 kb on + strand, within zitB at 783.367 kb on + strand, within zitB at 783.392 kb on - strand, within zitB at 783.426 kb on + strand, within zitB at 783.445 kb on - strand, within zitB at 783.569 kb on - strand, within zitB at 783.763 kb on - strand, within zitB at 783.890 kb on + strand, within zitB at 784.014 kb on + strand at 784.014 kb on + strand at 784.014 kb on + strand at 784.014 kb on - strand at 784.014 kb on - strand at 784.022 kb on - strand at 784.036 kb on - strand at 784.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 781,430 - nadA b0750 0.12 +0.2 781,430 - nadA b0750 0.12 +0.0 781,443 + nadA b0750 0.13 -1.4 781,456 - nadA b0750 0.14 -0.1 781,456 - nadA b0750 0.14 -1.6 781,456 - nadA b0750 0.14 +0.3 781,468 + nadA b0750 0.15 +0.3 781,708 + nadA b0750 0.38 +1.1 781,760 - nadA b0750 0.43 +0.6 781,847 + nadA b0750 0.52 +0.3 781,982 - nadA b0750 0.65 +0.2 782,171 - nadA b0750 0.83 +1.2 782,171 - nadA b0750 0.83 +1.8 782,226 - nadA b0750 0.88 +0.2 782,284 + -0.9 782,319 + +0.6 782,404 + +0.1 782,404 + -1.2 782,429 - +0.2 782,485 + pnuC b0751 0.13 +1.7 782,508 - pnuC b0751 0.17 +0.6 782,508 - pnuC b0751 0.17 +0.0 782,510 + pnuC b0751 0.17 +0.9 782,537 - pnuC b0751 0.21 +0.3 782,701 + pnuC b0751 0.43 -0.0 782,754 + pnuC b0751 0.51 +0.3 782,803 + pnuC b0751 0.57 +0.7 782,803 + pnuC b0751 0.57 +1.1 782,824 + pnuC b0751 0.60 -0.4 782,824 + pnuC b0751 0.60 +0.0 782,848 - pnuC b0751 0.64 +1.7 782,848 - pnuC b0751 0.64 -0.9 782,888 - pnuC b0751 0.69 +0.4 782,921 + pnuC b0751 0.74 +0.6 782,921 + pnuC b0751 0.74 +0.9 783,018 - pnuC b0751 0.87 +0.3 783,127 - +0.0 783,158 + -0.2 783,179 - +0.2 783,193 - -1.9 783,193 - +0.3 783,202 + zitB b0752 0.10 -0.6 783,202 + zitB b0752 0.10 +1.2 783,243 - zitB b0752 0.15 +0.1 783,270 + zitB b0752 0.18 -0.3 783,270 + zitB b0752 0.18 -1.3 783,317 + zitB b0752 0.23 +0.4 783,341 + zitB b0752 0.25 -0.5 783,352 + zitB b0752 0.26 +0.2 783,367 + zitB b0752 0.28 -0.6 783,392 - zitB b0752 0.30 -0.4 783,426 + zitB b0752 0.34 -0.4 783,445 - zitB b0752 0.36 +0.0 783,569 - zitB b0752 0.49 +1.4 783,763 - zitB b0752 0.70 +0.6 783,890 + zitB b0752 0.83 -1.0 784,014 + +0.0 784,014 + +0.3 784,014 + -0.2 784,014 - -0.7 784,014 - +1.3 784,022 - +0.4 784,036 - -1.5 784,036 - +1.9
Or see this region's nucleotide sequence