Strain Fitness in Escherichia coli BW25113 around b3405

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
3,532,888	-	envZ	b3404	0.26	-2.2
3,532,919	+	envZ	b3404	0.28	+0.2
3,532,970	-	envZ	b3404	0.32	-1.6
3,532,973	+	envZ	b3404	0.32	-0.2
3,533,031	-	envZ	b3404	0.36	-0.3
3,533,093	+	envZ	b3404	0.41	-0.6
3,533,139	-	envZ	b3404	0.44	+0.4
3,533,159	+	envZ	b3404	0.46	-2.0
3,533,203	+	envZ	b3404	0.49	-0.3
3,533,264	+	envZ	b3404	0.54	-0.1
3,533,306	+	envZ	b3404	0.57	-1.6
3,533,314	-	envZ	b3404	0.57	-0.8
3,533,326	-	envZ	b3404	0.58	-0.8
3,533,342	+	envZ	b3404	0.59	+0.4
3,533,350	-	envZ	b3404	0.60	-0.0
3,533,350	-	envZ	b3404	0.60	+0.6
3,533,360	-	envZ	b3404	0.61	-1.2
3,533,360	-	envZ	b3404	0.61	-2.2
3,533,398	+	envZ	b3404	0.64	-1.2
3,533,400	+	envZ	b3404	0.64	-3.0
3,533,406	-	envZ	b3404	0.64	-1.0
3,533,458	+	envZ	b3404	0.68	+0.7
3,533,460	+	envZ	b3404	0.68	+0.3
3,533,492	+	envZ	b3404	0.71	-0.7
3,533,519	+	envZ	b3404	0.73	-0.5
3,533,523	-	envZ	b3404	0.73	+0.7
3,533,571	-	envZ	b3404	0.76	-0.1
3,533,571	-	envZ	b3404	0.76	-0.5
3,533,572	-	envZ	b3404	0.76	+0.3
3,533,599	-	envZ	b3404	0.78	-0.2
3,533,629	-	envZ	b3404	0.81	-0.7
3,533,676	+	envZ	b3404	0.84	-0.7
3,533,693	+	envZ	b3404	0.85	-0.9
3,533,723	+	envZ	b3404	0.88	-0.9
3,533,832	+				+1.0
3,533,853	-				-1.9
3,533,853	-				-2.1
3,533,871	-				-1.0
3,533,892	+				+0.9
3,533,900	-				+0.4
3,533,900	-				+1.0
3,533,900	-				+0.7
3,533,900	-				+0.6
3,533,907	+				-3.4
3,533,926	+				-0.5
3,533,933	-				-0.7
3,533,950	-				-1.5
3,534,010	-	ompR	b3405	0.17	+1.0
3,534,010	-	ompR	b3405	0.17	-1.5
3,534,057	-	ompR	b3405	0.24	-1.2
3,534,093	+	ompR	b3405	0.29	-0.5
3,534,097	+	ompR	b3405	0.29	-0.1
3,534,097	+	ompR	b3405	0.29	-1.8
3,534,097	+	ompR	b3405	0.29	-2.8
3,534,105	-	ompR	b3405	0.30	-2.4
3,534,105	-	ompR	b3405	0.30	+0.2
3,534,129	-	ompR	b3405	0.34	-2.8
3,534,168	-	ompR	b3405	0.39	+1.5
3,534,206	+	ompR	b3405	0.44	-2.5
3,534,228	-	ompR	b3405	0.47	-1.0
3,534,257	-	ompR	b3405	0.51	-0.2
3,534,260	-	ompR	b3405	0.52	-1.8
3,534,267	-	ompR	b3405	0.53	-2.0
3,534,267	-	ompR	b3405	0.53	-1.8
3,534,358	-	ompR	b3405	0.65	-1.0
3,534,436	+	ompR	b3405	0.76	-0.3
3,534,447	+	ompR	b3405	0.78	-0.9
3,534,456	-	ompR	b3405	0.79	-2.4
3,534,509	+	ompR	b3405	0.86	+0.1
3,534,514	+	ompR	b3405	0.87	-0.7
3,534,514	+	ompR	b3405	0.87	-1.4
3,534,522	-	ompR	b3405	0.88	-3.9
3,534,541	-				+2.0
3,534,541	-				-1.2
3,534,544	+				-0.3
3,534,606	-				-0.6
3,534,608	+				+0.6
3,534,608	+				-0.1
3,534,616	+				-0.3
3,534,625	-				+0.6
3,534,632	+				+0.1
3,534,684	-				-1.0
3,534,724	-				-1.1
3,534,783	-				-0.3
3,534,851	-				-2.6
3,534,851	-				-0.3
3,534,852	+				-1.7
3,534,861	-				+0.1
3,534,861	-				-0.3
3,534,889	+	greB	b3406	0.12	-2.4
3,534,889	+	greB	b3406	0.12	-3.3
3,534,940	-	greB	b3406	0.22	-0.6
3,534,940	-	greB	b3406	0.22	-0.2
3,534,988	-	greB	b3406	0.32	-1.5
3,535,024	+	greB	b3406	0.40	+0.4
3,535,027	-	greB	b3406	0.40	+0.3
3,535,027	-	greB	b3406	0.40	-3.3
3,535,030	-	greB	b3406	0.41	-0.5
3,535,066	-	greB	b3406	0.49	-0.4
3,535,094	-	greB	b3406	0.55	-0.6
3,535,099	+	greB	b3406	0.56	-0.1
3,535,149	+	greB	b3406	0.66	+0.2
3,535,257	-	greB	b3406	0.89	-0.7
3,535,257	-	greB	b3406	0.89	-0.5
3,535,274	+				+0.2
3,535,287	+				+0.0
3,535,297	+				+1.2
3,535,297	+				+0.5
3,535,299	+				+0.7
3,535,305	-				-0.0
3,535,305	-				-0.8
3,535,317	+				+0.3
3,535,317	-				-0.7
3,535,325	-				+0.8
3,535,325	-				+0.6
3,535,359	+				-0.5
3,535,359	+				+0.7
3,535,361	+				+0.3
3,535,397	+				+1.0
3,535,485	-				-0.3
3,535,496	+				+0.7
3,535,496	+				+1.3
3,535,498	+				+0.1
3,535,546	+				+0.1
3,535,563	-				+1.0
3,535,563	-				-0.7
3,535,573	-				-0.5
3,535,581	+				+0.3