Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glpB and glpC overlap by 4 nucleotides glpC and yfaD are separated by 192 nucleotides
b2242: glpB - anaerobic glycerol-3-phosphate dehydrogenase subunit B (NCBI), at 2,352,287 to 2,353,546
glpB
b2243: glpC - sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit (NCBI), at 2,353,543 to 2,354,733
glpC
b2244: yfaD - hypothetical protein (NCBI), at 2,354,926 to 2,355,825
yfaD
Position (kb)
2353
2354
2355 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2352.547 kb on + strand, within glpB at 2352.631 kb on + strand, within glpB at 2352.650 kb on + strand, within glpB at 2352.650 kb on + strand, within glpB at 2352.787 kb on - strand, within glpB at 2353.281 kb on + strand, within glpB at 2353.291 kb on + strand, within glpB at 2353.291 kb on + strand, within glpB at 2353.326 kb on - strand, within glpB at 2353.326 kb on - strand, within glpB at 2353.379 kb on - strand, within glpB at 2353.400 kb on + strand, within glpB at 2353.400 kb on + strand, within glpB at 2353.436 kb on + strand at 2353.436 kb on + strand at 2353.446 kb on + strand at 2353.575 kb on - strand at 2353.575 kb on - strand at 2353.577 kb on + strand at 2353.577 kb on + strand at 2353.615 kb on - strand at 2353.684 kb on + strand, within glpC at 2353.686 kb on + strand, within glpC at 2353.696 kb on - strand, within glpC at 2353.696 kb on - strand, within glpC at 2353.767 kb on + strand, within glpC at 2353.812 kb on + strand, within glpC at 2353.853 kb on + strand, within glpC at 2353.853 kb on + strand, within glpC at 2353.871 kb on - strand, within glpC at 2354.115 kb on - strand, within glpC at 2354.125 kb on - strand, within glpC at 2354.125 kb on - strand, within glpC at 2354.169 kb on + strand, within glpC at 2354.278 kb on - strand, within glpC at 2354.438 kb on - strand, within glpC at 2354.534 kb on + strand, within glpC at 2354.542 kb on - strand, within glpC at 2354.591 kb on + strand, within glpC at 2354.676 kb on + strand at 2354.676 kb on + strand at 2354.684 kb on - strand at 2354.752 kb on + strand at 2354.793 kb on - strand at 2354.793 kb on - strand at 2354.892 kb on - strand at 2354.926 kb on - strand at 2354.926 kb on - strand at 2354.941 kb on - strand at 2354.941 kb on - strand at 2355.020 kb on + strand, within yfaD at 2355.149 kb on + strand, within yfaD at 2355.322 kb on - strand, within yfaD at 2355.322 kb on - strand, within yfaD at 2355.322 kb on - strand, within yfaD at 2355.369 kb on + strand, within yfaD at 2355.396 kb on + strand, within yfaD at 2355.438 kb on + strand, within yfaD at 2355.438 kb on + strand, within yfaD at 2355.448 kb on + strand, within yfaD at 2355.448 kb on + strand, within yfaD at 2355.448 kb on + strand, within yfaD at 2355.499 kb on + strand, within yfaD at 2355.665 kb on - strand, within yfaD
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 2,352,547 + glpB b2242 0.21 +0.8 2,352,631 + glpB b2242 0.27 +0.1 2,352,650 + glpB b2242 0.29 -0.6 2,352,650 + glpB b2242 0.29 -0.0 2,352,787 - glpB b2242 0.40 +0.3 2,353,281 + glpB b2242 0.79 -0.9 2,353,291 + glpB b2242 0.80 -0.8 2,353,291 + glpB b2242 0.80 +1.2 2,353,326 - glpB b2242 0.82 +1.1 2,353,326 - glpB b2242 0.82 -2.2 2,353,379 - glpB b2242 0.87 -0.5 2,353,400 + glpB b2242 0.88 -1.9 2,353,400 + glpB b2242 0.88 +0.6 2,353,436 + -0.3 2,353,436 + -1.2 2,353,446 + -2.6 2,353,575 - -1.5 2,353,575 - +0.3 2,353,577 + +0.6 2,353,577 + +0.3 2,353,615 - +0.4 2,353,684 + glpC b2243 0.12 -0.1 2,353,686 + glpC b2243 0.12 +0.5 2,353,696 - glpC b2243 0.13 +0.6 2,353,696 - glpC b2243 0.13 +1.2 2,353,767 + glpC b2243 0.19 +0.5 2,353,812 + glpC b2243 0.23 +0.6 2,353,853 + glpC b2243 0.26 +0.7 2,353,853 + glpC b2243 0.26 -0.2 2,353,871 - glpC b2243 0.28 +0.2 2,354,115 - glpC b2243 0.48 +0.2 2,354,125 - glpC b2243 0.49 +0.6 2,354,125 - glpC b2243 0.49 +0.3 2,354,169 + glpC b2243 0.53 +0.2 2,354,278 - glpC b2243 0.62 -0.2 2,354,438 - glpC b2243 0.75 +0.8 2,354,534 + glpC b2243 0.83 -0.7 2,354,542 - glpC b2243 0.84 +2.0 2,354,591 + glpC b2243 0.88 +1.2 2,354,676 + +0.5 2,354,676 + +0.6 2,354,684 - -0.9 2,354,752 + -0.3 2,354,793 - -0.9 2,354,793 - +1.8 2,354,892 - -1.0 2,354,926 - -0.5 2,354,926 - -2.1 2,354,941 - +0.3 2,354,941 - +0.4 2,355,020 + yfaD b2244 0.10 +0.1 2,355,149 + yfaD b2244 0.25 -0.3 2,355,322 - yfaD b2244 0.44 +0.3 2,355,322 - yfaD b2244 0.44 +0.1 2,355,322 - yfaD b2244 0.44 +0.1 2,355,369 + yfaD b2244 0.49 +0.4 2,355,396 + yfaD b2244 0.52 +0.1 2,355,438 + yfaD b2244 0.57 -0.4 2,355,438 + yfaD b2244 0.57 -0.4 2,355,448 + yfaD b2244 0.58 +0.4 2,355,448 + yfaD b2244 0.58 -0.5 2,355,448 + yfaD b2244 0.58 -0.1 2,355,499 + yfaD b2244 0.64 -0.5 2,355,665 - yfaD b2244 0.82 +0.3
Or see this region's nucleotide sequence