Strain Fitness in Escherichia coli BW25113 around b2204
Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep B; time point 1 |
---|---|---|---|---|---|
remove | |||||
2,295,760 | + | napC | b2202 | 0.13 | +0.3 |
2,295,760 | + | napC | b2202 | 0.13 | -0.2 |
2,295,769 | + | napC | b2202 | 0.15 | +0.4 |
2,295,806 | + | napC | b2202 | 0.21 | +1.5 |
2,295,880 | + | napC | b2202 | 0.33 | -0.6 |
2,295,921 | - | napC | b2202 | 0.40 | +0.3 |
2,296,069 | - | napC | b2202 | 0.65 | +0.7 |
2,296,154 | - | napC | b2202 | 0.79 | +0.1 |
2,296,254 | + | +0.1 | |||
2,296,254 | + | +1.1 | |||
2,296,348 | + | napB | b2203 | 0.13 | +0.3 |
2,296,348 | + | napB | b2203 | 0.13 | +0.6 |
2,296,356 | + | napB | b2203 | 0.14 | +0.2 |
2,296,356 | + | napB | b2203 | 0.14 | -1.2 |
2,296,368 | + | napB | b2203 | 0.17 | -0.1 |
2,296,431 | + | napB | b2203 | 0.31 | +0.3 |
2,296,491 | + | napB | b2203 | 0.44 | -0.1 |
2,296,491 | + | napB | b2203 | 0.44 | +0.1 |
2,296,491 | - | napB | b2203 | 0.44 | +0.3 |
2,296,545 | + | napB | b2203 | 0.56 | +0.8 |
2,296,578 | + | napB | b2203 | 0.64 | -2.5 |
2,296,578 | + | napB | b2203 | 0.64 | +1.0 |
2,296,675 | + | napB | b2203 | 0.85 | -0.2 |
2,296,695 | - | napB | b2203 | 0.90 | -3.8 |
2,296,773 | + | +0.1 | |||
2,296,773 | + | -0.1 | |||
2,296,779 | - | +0.3 | |||
2,296,880 | - | napH | b2204 | 0.17 | +0.5 |
2,296,953 | + | napH | b2204 | 0.25 | +0.9 |
2,297,095 | - | napH | b2204 | 0.41 | +0.8 |
2,297,341 | + | napH | b2204 | 0.70 | +0.3 |
2,297,444 | - | napH | b2204 | 0.82 | +0.3 |
2,297,464 | + | napH | b2204 | 0.84 | +0.1 |
2,297,476 | - | napH | b2204 | 0.86 | -1.1 |
2,297,476 | - | napH | b2204 | 0.86 | +0.6 |
2,297,517 | + | -0.4 | |||
2,297,535 | - | +0.3 | |||
2,297,535 | - | -0.6 | |||
2,297,585 | - | +0.1 | |||
2,297,585 | - | +0.6 | |||
2,297,615 | - | +0.2 | |||
2,297,676 | - | napG | b2205 | 0.13 | +0.1 |
2,297,791 | + | napG | b2205 | 0.29 | -0.4 |
2,297,798 | + | napG | b2205 | 0.30 | -0.3 |
2,297,949 | + | napG | b2205 | 0.52 | +0.2 |
2,297,953 | - | napG | b2205 | 0.53 | +0.2 |
2,298,068 | + | napG | b2205 | 0.69 | +0.1 |
2,298,073 | + | napG | b2205 | 0.70 | -0.2 |
2,298,161 | - | napG | b2205 | 0.82 | -0.0 |
2,298,190 | + | napG | b2205 | 0.87 | -0.2 |
2,298,194 | + | napG | b2205 | 0.87 | -0.8 |
2,298,340 | - | -1.1 | |||
2,298,340 | - | -0.3 | |||
2,298,469 | + | -0.4 | |||
2,298,562 | + | napA | b2206 | 0.11 | -0.2 |
2,298,565 | + | napA | b2206 | 0.11 | +0.3 |
2,298,570 | - | napA | b2206 | 0.11 | +0.7 |
2,298,572 | + | napA | b2206 | 0.11 | -0.7 |
2,298,578 | - | napA | b2206 | 0.12 | -0.7 |
2,298,582 | + | napA | b2206 | 0.12 | +0.2 |
2,298,582 | + | napA | b2206 | 0.12 | +0.4 |
Or see this region's nucleotide sequence