Strain Fitness in Escherichia coli BW25113 around b1862

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,943,892	+	ruvA	b1861	0.82	-0.8
1,943,919	-	ruvA	b1861	0.87	+1.5
1,943,934	-	ruvA	b1861	0.89	-1.4
1,943,990	-				+0.3
1,943,996	+				+1.2
1,943,996	+				+1.4
1,944,021	+				+0.6
1,944,102	+				-0.3
1,944,102	+				+1.0
1,944,137	+				+2.7
1,944,333	-				+0.4
1,944,333	-				+0.7
1,944,511	-	yebB	b1862	0.39	+2.4
1,944,560	-	yebB	b1862	0.47	+1.0
1,944,582	+	yebB	b1862	0.51	+1.5
1,944,622	+	yebB	b1862	0.58	-0.4
1,944,625	-	yebB	b1862	0.58	+1.9
1,944,625	-	yebB	b1862	0.58	+0.4
1,944,625	-	yebB	b1862	0.58	-1.4
1,944,669	-	yebB	b1862	0.65	-1.0
1,944,674	-	yebB	b1862	0.66	+0.0
1,944,723	-	yebB	b1862	0.74	-0.6
1,944,818	+				+1.3
1,944,818	+				-1.3
1,944,826	-				+1.0
1,944,826	-				-0.3
1,944,829	+				-0.2
1,944,846	-				+0.7
1,944,885	-				+0.2
1,944,885	-				+0.9
1,944,895	-				+0.3
1,944,908	+				-0.8
1,944,916	-				+0.3
1,945,037	-	ruvC	b1863	0.30	-0.2
1,945,078	-	ruvC	b1863	0.38	-1.9
1,945,219	+	ruvC	b1863	0.65	+0.4
1,945,255	-	ruvC	b1863	0.72	-0.3
1,945,260	-	ruvC	b1863	0.73	-3.1
1,945,307	+	ruvC	b1863	0.82	-0.1
1,945,323	-	ruvC	b1863	0.85	-1.1
1,945,396	-				-1.5
1,945,455	+				+0.8
1,945,524	-	yebC	b1864	0.12	-0.2
1,945,557	-	yebC	b1864	0.16	+0.3
1,945,557	-	yebC	b1864	0.16	-0.0
1,945,623	-	yebC	b1864	0.25	-0.3
1,945,623	-	yebC	b1864	0.25	+0.5
1,945,640	-	yebC	b1864	0.28	-0.9
1,945,640	-	yebC	b1864	0.28	+0.2
1,945,652	+	yebC	b1864	0.29	-1.9
1,945,663	-	yebC	b1864	0.31	+0.2
1,945,726	-	yebC	b1864	0.39	+0.4