Strain Fitness in Escherichia coli BW25113 around b1850
Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep B; time point 1 |
---|---|---|---|---|---|
remove | |||||
1,929,150 | - | purT | b1849 | 0.21 | -0.0 |
1,929,362 | + | purT | b1849 | 0.39 | +0.0 |
1,929,362 | + | purT | b1849 | 0.39 | -0.1 |
1,929,640 | - | purT | b1849 | 0.62 | -1.6 |
1,929,640 | - | purT | b1849 | 0.62 | -3.1 |
1,929,683 | + | purT | b1849 | 0.66 | +0.1 |
1,929,683 | + | purT | b1849 | 0.66 | +0.1 |
1,929,759 | - | purT | b1849 | 0.72 | -0.9 |
1,929,800 | + | purT | b1849 | 0.76 | -0.7 |
1,930,003 | + | +0.9 | |||
1,930,263 | + | eda | b1850 | 0.19 | -0.2 |
1,930,411 | - | eda | b1850 | 0.42 | -0.3 |
1,930,626 | - | eda | b1850 | 0.76 | +1.2 |
1,930,626 | - | eda | b1850 | 0.76 | +1.6 |
1,930,833 | + | +0.4 | |||
1,930,841 | - | +0.8 | |||
1,930,843 | + | +0.3 | |||
1,930,843 | + | -0.9 | |||
1,930,988 | + | -0.5 | |||
1,931,044 | - | edd | b1851 | 0.13 | -0.1 |
1,931,065 | - | edd | b1851 | 0.14 | +0.9 |
1,931,065 | - | edd | b1851 | 0.14 | -0.6 |
1,931,095 | + | edd | b1851 | 0.15 | +0.2 |
1,931,142 | + | edd | b1851 | 0.18 | +0.1 |
1,931,353 | - | edd | b1851 | 0.30 | -0.8 |
1,931,392 | + | edd | b1851 | 0.32 | -0.5 |
1,931,484 | - | edd | b1851 | 0.37 | +0.1 |
1,931,549 | - | edd | b1851 | 0.40 | -1.0 |
1,931,549 | - | edd | b1851 | 0.40 | +0.6 |
1,931,566 | - | edd | b1851 | 0.41 | -0.3 |
1,931,566 | - | edd | b1851 | 0.41 | -0.1 |
1,931,591 | - | edd | b1851 | 0.43 | +0.1 |
Or see this region's nucleotide sequence