Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1757 and b1758 are separated by 8 nucleotides b1758 and nudG are separated by 86 nucleotides nudG and ynjH overlap by 35 nucleotides ynjH and gdhA are separated by 235 nucleotides
b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798
b1757
b1758: b1758 - putative cytochrome oxidase (VIMSS), at 1,838,807 to 1,839,427
b1758
b1759: nudG - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase (NCBI), at 1,839,514 to 1,839,921
nudG
b1760: ynjH - hypothetical protein (NCBI), at 1,839,887 to 1,840,159
ynjH
b1761: gdhA - glutamate dehydrogenase (NCBI), at 1,840,395 to 1,841,738
gdhA
Position (kb)
1838
1839
1840 Strain fitness (log2 ratio)
-1
0
1
2 at 1838.008 kb on - strand, within b1757 at 1838.022 kb on + strand, within b1757 at 1838.065 kb on - strand, within b1757 at 1838.179 kb on + strand, within b1757 at 1838.194 kb on - strand, within b1757 at 1838.463 kb on + strand, within b1757 at 1838.563 kb on + strand, within b1757 at 1838.833 kb on + strand at 1838.833 kb on + strand at 1839.201 kb on + strand, within b1758 at 1839.552 kb on - strand at 1839.552 kb on - strand at 1839.760 kb on - strand, within nudG at 1839.893 kb on - strand at 1840.011 kb on + strand, within ynjH at 1840.026 kb on - strand, within ynjH at 1840.029 kb on - strand, within ynjH at 1840.031 kb on - strand, within ynjH at 1840.258 kb on - strand at 1840.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 1,838,008 - b1757 b1757 0.40 +0.4 1,838,022 + b1757 b1757 0.41 -0.0 1,838,065 - b1757 b1757 0.44 +0.1 1,838,179 + b1757 b1757 0.53 -0.5 1,838,194 - b1757 b1757 0.54 -1.0 1,838,463 + b1757 b1757 0.74 +0.6 1,838,563 + b1757 b1757 0.82 +0.0 1,838,833 + +2.0 1,838,833 + -1.6 1,839,201 + b1758 b1758 0.63 +0.7 1,839,552 - +1.3 1,839,552 - -0.7 1,839,760 - nudG b1759 0.60 -0.6 1,839,893 - +0.3 1,840,011 + ynjH b1760 0.45 +0.0 1,840,026 - ynjH b1760 0.51 -0.6 1,840,029 - ynjH b1760 0.52 -0.3 1,840,031 - ynjH b1760 0.53 -0.2 1,840,258 - +0.4 1,840,325 - -0.3
Or see this region's nucleotide sequence