Strain Fitness in Escherichia coli BW25113 around b1547

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpinQ and tfaQ are separated by 97 nucleotidestfaQ and stfQ overlap by 1 nucleotidesstfQ and nohA overlap by 8 nucleotidesnohA and ynfO are separated by 388 nucleotides b1545: pinQ - Qin prophage; predicted site-specific recombinase (NCBI), at 1,631,646 to 1,632,236 pinQ b1546: tfaQ - Qin prophage; predicted tail fibre assembly protein (NCBI), at 1,632,334 to 1,632,909 tfaQ b1547: stfQ - Qin prophage; predicted side tail fibre assembly protein (NCBI), at 1,632,909 to 1,633,871 stfQ b1548: nohA - Qin prophage; predicted packaging protein (RefSeq), at 1,633,864 to 1,634,391 nohA b4533: ynfO - Qin prophage; predicted protein (NCBI), at 1,634,780 to 1,635,013 ynfO Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -1 0 1at 1632.142 kb on - strand, within pinQat 1632.995 kb on + strandat 1633.092 kb on - strand, within stfQat 1633.234 kb on + strand, within stfQat 1633.234 kb on + strand, within stfQat 1633.282 kb on - strand, within stfQat 1633.282 kb on - strand, within stfQat 1633.282 kb on - strand, within stfQat 1633.716 kb on + strand, within stfQat 1633.724 kb on - strand, within stfQat 1633.724 kb on - strand, within stfQat 1633.829 kb on - strandat 1634.153 kb on + strand, within nohAat 1634.153 kb on + strand, within nohA

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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1,632,142 - pinQ b1545 0.84 +0.2
1,632,995 + +0.9
1,633,092 - stfQ b1547 0.19 +1.4
1,633,234 + stfQ b1547 0.34 +0.6
1,633,234 + stfQ b1547 0.34 -0.1
1,633,282 - stfQ b1547 0.39 +0.4
1,633,282 - stfQ b1547 0.39 +1.6
1,633,282 - stfQ b1547 0.39 -0.0
1,633,716 + stfQ b1547 0.84 +1.6
1,633,724 - stfQ b1547 0.85 +0.7
1,633,724 - stfQ b1547 0.85 -0.4
1,633,829 - +0.1
1,634,153 + nohA b1548 0.55 +0.0
1,634,153 + nohA b1548 0.55 +0.0

Or see this region's nucleotide sequence