Strain Fitness in Escherichia coli BW25113 around b1041

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
1,102,334	-	csgD	b1040	0.87	+2.4
1,102,458	-				+0.4
1,102,460	-				+1.3
1,102,460	-				-0.7
1,102,483	-				-1.7
1,102,486	-				+0.8
1,102,504	-				+2.2
1,102,504	-				+1.3
1,102,514	-				+2.4
1,102,514	-				+0.6
1,102,851	+				+1.4
1,102,865	+				+2.4
1,102,895	+				+1.4
1,102,901	+				+2.4
1,102,901	+				+0.8
1,102,919	+				+1.4
1,103,158	+				+0.8
1,103,159	+				+1.4
1,103,312	-	csgB	b1041	0.30	+2.4
1,103,341	-	csgB	b1041	0.37	+0.4
1,103,354	+	csgB	b1041	0.39	+2.7
1,103,362	-	csgB	b1041	0.41	+0.9
1,103,371	+	csgB	b1041	0.43	-1.3
1,103,395	+	csgB	b1041	0.48	-0.6
1,103,395	+	csgB	b1041	0.48	+3.2
1,103,399	+	csgB	b1041	0.49	+0.5
1,103,399	+	csgB	b1041	0.49	+1.0
1,103,458	+	csgB	b1041	0.62	+1.4
1,103,481	+	csgB	b1041	0.67	+0.7
1,103,485	+	csgB	b1041	0.68	+1.8
1,103,519	+	csgB	b1041	0.76	+1.0
1,103,547	+	csgB	b1041	0.82	+1.6
1,103,547	+	csgB	b1041	0.82	+1.2
1,103,557	+	csgB	b1041	0.84	+0.9
1,103,563	-	csgB	b1041	0.85	+2.7
1,103,585	+				+0.7
1,103,621	-				+1.5
1,103,649	-				-0.5
1,103,711	+				-0.7
1,103,728	-	csgA	b1042	0.13	-0.3
1,103,730	+	csgA	b1042	0.13	+1.5
1,103,731	+	csgA	b1042	0.13	+1.3
1,103,734	+	csgA	b1042	0.14	+0.4
1,103,734	+	csgA	b1042	0.14	-0.6
1,103,739	-	csgA	b1042	0.15	+1.8
1,103,749	-	csgA	b1042	0.17	+0.4
1,103,794	+	csgA	b1042	0.27	+0.1
1,103,829	-	csgA	b1042	0.35	+2.1
1,103,831	-	csgA	b1042	0.35	+1.6
1,103,875	+	csgA	b1042	0.45	+0.9
1,103,875	+	csgA	b1042	0.45	+1.4
1,103,902	+	csgA	b1042	0.51	+1.7
1,103,928	-	csgA	b1042	0.57	+1.7
1,103,951	+	csgA	b1042	0.62	+0.3
1,104,020	+	csgA	b1042	0.77	+2.0
1,104,035	+	csgA	b1042	0.80	+1.0
1,104,035	+	csgA	b1042	0.80	+1.1
1,104,037	+	csgA	b1042	0.80	+0.7
1,104,037	+	csgA	b1042	0.80	-0.7
1,104,037	+	csgA	b1042	0.80	-0.6
1,104,037	+	csgA	b1042	0.80	-0.6
1,104,045	-	csgA	b1042	0.82	+2.0
1,104,045	-	csgA	b1042	0.82	+2.7
1,104,055	-	csgA	b1042	0.84	+0.8
1,104,055	-	csgA	b1042	0.84	+0.9
1,104,065	-	csgA	b1042	0.87	+1.6
1,104,119	+				+0.1
1,104,119	+				-0.5
1,104,128	+				+0.4
1,104,227	+	csgC	b1043	0.13	+0.1
1,104,241	-	csgC	b1043	0.17	+0.3
1,104,253	+	csgC	b1043	0.21	-0.6
1,104,255	+	csgC	b1043	0.21	+1.6
1,104,255	+	csgC	b1043	0.21	+0.3
1,104,255	+	csgC	b1043	0.21	-0.2
1,104,255	+	csgC	b1043	0.21	+1.5
1,104,261	-	csgC	b1043	0.23	-0.8
1,104,261	-	csgC	b1043	0.23	+0.5
1,104,268	-	csgC	b1043	0.25	-0.2
1,104,268	-	csgC	b1043	0.25	+0.4
1,104,274	-	csgC	b1043	0.27	+0.5
1,104,286	-	csgC	b1043	0.31	+0.2
1,104,286	-	csgC	b1043	0.31	+0.1
1,104,300	-	csgC	b1043	0.35	+0.2
1,104,319	-	csgC	b1043	0.41	-1.6
1,104,332	+	csgC	b1043	0.44	+0.6
1,104,332	+	csgC	b1043	0.44	+1.2
1,104,340	-	csgC	b1043	0.47	+0.0
1,104,340	-	csgC	b1043	0.47	-2.2
1,104,340	-	csgC	b1043	0.47	+0.1
1,104,340	-	csgC	b1043	0.47	+0.8
1,104,342	+	csgC	b1043	0.47	-1.7
1,104,343	+	csgC	b1043	0.48	+0.3
1,104,377	+	csgC	b1043	0.58	-0.7
1,104,383	-	csgC	b1043	0.60	-0.3
1,104,388	-	csgC	b1043	0.61	+0.0
1,104,443	-	csgC	b1043	0.78	+0.2
1,104,466	+	csgC	b1043	0.85	-0.4
1,104,476	-	csgC	b1043	0.88	+1.0
1,104,492	-				-0.1
1,104,508	-				+0.4
1,104,553	+				+1.9
1,104,558	+				+0.8
1,104,558	+				-0.1
1,104,577	+				+1.6
1,104,597	-				+1.2
1,104,599	+				+0.8
1,104,607	-				+1.1