Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potH and potI overlap by 4 nucleotides potI and ybjO are separated by 59 nucleotides ybjO and rumB are separated by 40 nucleotides
b0856: potH - putrescine transporter subunit: membrane component of ABC superfamily (NCBI), at 895,357 to 896,310
potH
b0857: potI - putrescine transporter subunit: membrane component of ABC superfamily (NCBI), at 896,307 to 897,152
potI
b0858: ybjO - predicted inner membrane protein (NCBI), at 897,212 to 897,700
ybjO
b0859: rumB - 23S rRNA m(5)U747-methyltransferase (NCBI), at 897,741 to 898,868
rumB
Position (kb) 897
898 Strain fitness (log2 ratio) -2
-1
0
1 at 896.425 kb on + strand, within potI at 896.425 kb on + strand, within potI at 896.429 kb on + strand, within potI at 896.429 kb on + strand, within potI at 896.497 kb on - strand, within potI at 896.497 kb on - strand, within potI at 896.607 kb on - strand, within potI at 896.607 kb on - strand, within potI at 897.041 kb on + strand, within potI at 897.053 kb on - strand, within potI at 897.084 kb on - strand at 897.084 kb on - strand at 897.371 kb on - strand, within ybjO at 897.402 kb on - strand, within ybjO at 897.426 kb on + strand, within ybjO at 897.702 kb on - strand at 897.724 kb on + strand at 897.744 kb on - strand at 897.780 kb on - strand at 897.815 kb on - strand at 897.815 kb on - strand at 897.894 kb on + strand, within rumB at 897.894 kb on + strand, within rumB at 897.929 kb on + strand, within rumB at 897.929 kb on + strand, within rumB at 897.953 kb on + strand, within rumB at 897.956 kb on - strand, within rumB at 897.960 kb on + strand, within rumB at 898.006 kb on - strand, within rumB at 898.006 kb on - strand, within rumB at 898.164 kb on - strand, within rumB at 898.193 kb on - strand, within rumB at 898.201 kb on - strand, within rumB at 898.201 kb on - strand, within rumB at 898.293 kb on + strand, within rumB at 898.331 kb on + strand, within rumB at 898.331 kb on + strand, within rumB at 898.455 kb on + strand, within rumB at 898.455 kb on + strand, within rumB at 898.468 kb on + strand, within rumB at 898.468 kb on - strand, within rumB at 898.482 kb on + strand, within rumB at 898.490 kb on - strand, within rumB at 898.490 kb on - strand, within rumB at 898.497 kb on + strand, within rumB at 898.498 kb on + strand, within rumB at 898.549 kb on + strand, within rumB at 898.549 kb on + strand, within rumB at 898.549 kb on + strand, within rumB at 898.700 kb on + strand, within rumB at 898.700 kb on + strand, within rumB
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 896,425 + potI b0857 0.14 +1.5 896,425 + potI b0857 0.14 -0.6 896,429 + potI b0857 0.14 +0.2 896,429 + potI b0857 0.14 -1.3 896,497 - potI b0857 0.22 +0.8 896,497 - potI b0857 0.22 +0.7 896,607 - potI b0857 0.35 +0.5 896,607 - potI b0857 0.35 +0.1 897,041 + potI b0857 0.87 -0.3 897,053 - potI b0857 0.88 +0.1 897,084 - +0.9 897,084 - +1.4 897,371 - ybjO b0858 0.33 -0.7 897,402 - ybjO b0858 0.39 +1.1 897,426 + ybjO b0858 0.44 +1.7 897,702 - +0.3 897,724 + +0.5 897,744 - +1.0 897,780 - +0.7 897,815 - +0.1 897,815 - +0.6 897,894 + rumB b0859 0.14 -0.0 897,894 + rumB b0859 0.14 +0.9 897,929 + rumB b0859 0.17 +1.1 897,929 + rumB b0859 0.17 -2.6 897,953 + rumB b0859 0.19 +0.2 897,956 - rumB b0859 0.19 +0.5 897,960 + rumB b0859 0.19 -0.1 898,006 - rumB b0859 0.23 +1.4 898,006 - rumB b0859 0.23 +0.6 898,164 - rumB b0859 0.38 -0.0 898,193 - rumB b0859 0.40 -0.2 898,201 - rumB b0859 0.41 -0.5 898,201 - rumB b0859 0.41 +0.4 898,293 + rumB b0859 0.49 +0.5 898,331 + rumB b0859 0.52 -0.8 898,331 + rumB b0859 0.52 -0.5 898,455 + rumB b0859 0.63 -0.3 898,455 + rumB b0859 0.63 -0.1 898,468 + rumB b0859 0.64 +0.1 898,468 - rumB b0859 0.64 -1.1 898,482 + rumB b0859 0.66 +0.0 898,490 - rumB b0859 0.66 +0.1 898,490 - rumB b0859 0.66 +0.8 898,497 + rumB b0859 0.67 -0.6 898,498 + rumB b0859 0.67 +0.4 898,549 + rumB b0859 0.72 +1.0 898,549 + rumB b0859 0.72 +0.7 898,549 + rumB b0859 0.72 +0.6 898,700 + rumB b0859 0.85 -0.2 898,700 + rumB b0859 0.85 +0.9
Or see this region's nucleotide sequence