Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliG and yliH are separated by 212 nucleotides yliH and yliI are separated by 110 nucleotides
b0835: yliG - predicted SAM-dependent methyltransferase (NCBI), at 875,933 to 877,258
yliG
b0836: yliH - hypothetical protein (NCBI), at 877,471 to 877,854
yliH
b0837: yliI - predicted dehydrogenase (NCBI), at 877,965 to 879,080
yliI
Position (kb) 877
878 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 876.546 kb on + strand, within yliG at 876.546 kb on + strand, within yliG at 876.551 kb on + strand, within yliG at 876.584 kb on - strand, within yliG at 876.629 kb on + strand, within yliG at 876.713 kb on + strand, within yliG at 876.716 kb on - strand, within yliG at 876.729 kb on + strand, within yliG at 876.729 kb on + strand, within yliG at 876.763 kb on - strand, within yliG at 876.766 kb on - strand, within yliG at 876.845 kb on - strand, within yliG at 876.877 kb on + strand, within yliG at 876.891 kb on - strand, within yliG at 876.891 kb on - strand, within yliG at 876.925 kb on + strand, within yliG at 876.945 kb on - strand, within yliG at 876.945 kb on - strand, within yliG at 876.969 kb on + strand, within yliG at 876.969 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.009 kb on + strand, within yliG at 877.078 kb on + strand, within yliG at 877.098 kb on - strand, within yliG at 877.138 kb on - strand at 877.141 kb on + strand at 877.395 kb on + strand at 877.451 kb on + strand at 877.515 kb on - strand, within yliH at 877.634 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.762 kb on + strand, within yliH at 877.799 kb on + strand, within yliH at 877.846 kb on - strand at 877.936 kb on + strand at 877.940 kb on + strand at 877.940 kb on + strand at 877.970 kb on - strand at 877.970 kb on - strand at 878.117 kb on - strand, within yliI at 878.117 kb on - strand, within yliI at 878.310 kb on + strand, within yliI at 878.318 kb on - strand, within yliI at 878.318 kb on - strand, within yliI at 878.617 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.644 kb on + strand, within yliI at 878.654 kb on - strand, within yliI at 878.786 kb on + strand, within yliI at 878.847 kb on - strand, within yliI at 878.847 kb on - strand, within yliI at 878.848 kb on + strand, within yliI
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 876,546 + yliG b0835 0.46 +0.5 876,546 + yliG b0835 0.46 -0.5 876,551 + yliG b0835 0.47 -2.0 876,584 - yliG b0835 0.49 +1.6 876,629 + yliG b0835 0.52 +0.8 876,713 + yliG b0835 0.59 +0.7 876,716 - yliG b0835 0.59 +0.0 876,729 + yliG b0835 0.60 +0.2 876,729 + yliG b0835 0.60 +1.2 876,763 - yliG b0835 0.63 -0.5 876,766 - yliG b0835 0.63 -0.2 876,845 - yliG b0835 0.69 -0.1 876,877 + yliG b0835 0.71 -1.1 876,891 - yliG b0835 0.72 -3.8 876,891 - yliG b0835 0.72 -1.2 876,925 + yliG b0835 0.75 -0.9 876,945 - yliG b0835 0.76 -2.0 876,945 - yliG b0835 0.76 +0.9 876,969 + yliG b0835 0.78 -1.6 876,969 + yliG b0835 0.78 -0.3 877,009 + yliG b0835 0.81 -0.8 877,009 + yliG b0835 0.81 -0.1 877,078 + yliG b0835 0.86 +0.1 877,098 - yliG b0835 0.88 +0.7 877,138 - -0.1 877,141 + -0.1 877,395 + +0.4 877,451 + +0.2 877,515 - yliH b0836 0.11 -2.2 877,634 + yliH b0836 0.42 -1.1 877,762 + yliH b0836 0.76 +0.1 877,762 + yliH b0836 0.76 -0.9 877,799 + yliH b0836 0.85 -0.0 877,846 - +0.1 877,936 + -1.4 877,940 + -0.3 877,940 + -0.9 877,970 - -0.2 877,970 - +0.4 878,117 - yliI b0837 0.14 +0.1 878,117 - yliI b0837 0.14 +1.2 878,310 + yliI b0837 0.31 -0.6 878,318 - yliI b0837 0.32 -0.2 878,318 - yliI b0837 0.32 -0.3 878,617 + yliI b0837 0.58 -0.7 878,644 + yliI b0837 0.61 +0.5 878,644 + yliI b0837 0.61 +0.6 878,654 - yliI b0837 0.62 +0.1 878,786 + yliI b0837 0.74 +0.2 878,847 - yliI b0837 0.79 +1.3 878,847 - yliI b0837 0.79 -1.8 878,848 + yliI b0837 0.79 +0.9
Or see this region's nucleotide sequence