Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltK and gltJ overlap by 1 nucleotides gltJ and gltI are separated by 169 nucleotides gltI and insH-3 are separated by 249 nucleotides
b0653: gltK - glutamate and aspartate transporter subunit (NCBI), at 684,478 to 685,152
gltK
b0654: gltJ - glutamate and aspartate transporter subunit (NCBI), at 685,152 to 685,892
gltJ
b0655: gltI - glutamate and aspartate transporter subunit (NCBI), at 686,062 to 686,970
gltI
b0656: insH-3 - IS5 transposase and trans-activator (NCBI), at 687,220 to 688,236
insH-3
Position (kb) 686
687 Strain fitness (log2 ratio) -1
0
1 at 685.128 kb on - strand at 685.273 kb on - strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.367 kb on + strand, within gltJ at 685.421 kb on + strand, within gltJ at 685.567 kb on + strand, within gltJ at 685.567 kb on + strand, within gltJ at 685.588 kb on + strand, within gltJ at 685.603 kb on + strand, within gltJ at 685.603 kb on + strand, within gltJ at 685.687 kb on + strand, within gltJ at 685.687 kb on + strand, within gltJ at 685.695 kb on - strand, within gltJ at 685.695 kb on - strand, within gltJ at 685.701 kb on - strand, within gltJ at 685.737 kb on - strand, within gltJ at 685.737 kb on - strand, within gltJ at 685.741 kb on - strand, within gltJ at 685.831 kb on + strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.883 kb on - strand at 685.945 kb on + strand at 685.958 kb on - strand at 685.965 kb on - strand at 685.965 kb on - strand at 685.995 kb on + strand at 685.995 kb on + strand at 686.001 kb on + strand at 686.001 kb on + strand at 686.022 kb on - strand at 686.029 kb on - strand at 686.029 kb on - strand at 686.060 kb on + strand at 686.060 kb on + strand at 686.089 kb on + strand at 686.105 kb on - strand at 686.197 kb on + strand, within gltI at 686.276 kb on + strand, within gltI at 686.341 kb on + strand, within gltI at 686.770 kb on - strand, within gltI at 686.876 kb on + strand, within gltI at 686.884 kb on - strand at 687.053 kb on + strand at 687.053 kb on + strand at 687.066 kb on - strand at 687.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 685,128 - -0.0 685,273 - gltJ b0654 0.16 -0.3 685,314 + gltJ b0654 0.22 +0.4 685,314 + gltJ b0654 0.22 -0.1 685,367 + gltJ b0654 0.29 -1.2 685,421 + gltJ b0654 0.36 -0.3 685,567 + gltJ b0654 0.56 +0.1 685,567 + gltJ b0654 0.56 -0.5 685,588 + gltJ b0654 0.59 +0.2 685,603 + gltJ b0654 0.61 +0.5 685,603 + gltJ b0654 0.61 +0.1 685,687 + gltJ b0654 0.72 +0.4 685,687 + gltJ b0654 0.72 +0.3 685,695 - gltJ b0654 0.73 -1.4 685,695 - gltJ b0654 0.73 +0.2 685,701 - gltJ b0654 0.74 +0.6 685,737 - gltJ b0654 0.79 -0.2 685,737 - gltJ b0654 0.79 +0.2 685,741 - gltJ b0654 0.79 +0.2 685,831 + -0.4 685,831 - -0.7 685,831 - +0.6 685,883 - -0.4 685,945 + -0.2 685,958 - -1.7 685,965 - +1.3 685,965 - -0.7 685,995 + +0.6 685,995 + +0.9 686,001 + +0.7 686,001 + -0.8 686,022 - +0.3 686,029 - +0.3 686,029 - +0.3 686,060 + -1.2 686,060 + -1.2 686,089 + -0.7 686,105 - +0.5 686,197 + gltI b0655 0.15 -0.1 686,276 + gltI b0655 0.24 +0.1 686,341 + gltI b0655 0.31 +0.9 686,770 - gltI b0655 0.78 +1.0 686,876 + gltI b0655 0.90 +0.6 686,884 - +0.6 687,053 + -0.1 687,053 + -1.0 687,066 - -1.2 687,066 - -0.3
Or see this region's nucleotide sequence