Strain Fitness in Escherichia coli BW25113 around b0002

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
70	+				+0.4
70	+				-0.6
78	-				+0.9
78	-				+0.3
161	-				+0.7
185	-				+0.4
185	-				-2.3
208	+	thrL	b0001	0.27	-0.3
217	-	thrL	b0001	0.41	-0.5
257	-				-2.0
257	-				-0.5
440	-				-3.2
440	-				-0.0
454	-				-0.9
518	-				+0.3
518	-				-2.5
528	+				-0.1
592	+	thrA	b0002	0.10	-1.1
592	+	thrA	b0002	0.10	-2.9
666	+	thrA	b0002	0.13	-0.7
666	+	thrA	b0002	0.13	+0.7
675	-	thrA	b0002	0.14	-0.6
754	-	thrA	b0002	0.17	-0.1
754	-	thrA	b0002	0.17	-1.1
767	+	thrA	b0002	0.17	-2.4
775	-	thrA	b0002	0.18	-1.1
957	+	thrA	b0002	0.25	-2.6
957	+	thrA	b0002	0.25	-2.4
1,046	+	thrA	b0002	0.29	+0.1
1,136	-	thrA	b0002	0.32	-0.7
1,142	-	thrA	b0002	0.33	-0.6
1,161	+	thrA	b0002	0.33	-1.2
1,161	+	thrA	b0002	0.33	-0.4
1,161	+	thrA	b0002	0.33	-1.4
1,259	-	thrA	b0002	0.37	-0.9
1,259	-	thrA	b0002	0.37	-2.7
1,262	+	thrA	b0002	0.38	-0.3
1,270	-	thrA	b0002	0.38	-0.6
1,270	-	thrA	b0002	0.38	-2.1
1,280	-	thrA	b0002	0.38	-1.5
1,489	+	thrA	b0002	0.47	-0.1
1,599	-	thrA	b0002	0.51	-0.4
1,606	+	thrA	b0002	0.52	-1.4
1,627	+	thrA	b0002	0.52	-2.3
1,633	-	thrA	b0002	0.53	-0.3
1,633	-	thrA	b0002	0.53	-0.3
1,636	+	thrA	b0002	0.53	+0.3
1,636	+	thrA	b0002	0.53	+0.5
1,637	+	thrA	b0002	0.53	-0.4
1,711	-	thrA	b0002	0.56	-3.1
1,721	-	thrA	b0002	0.56	-0.2
1,767	-	thrA	b0002	0.58	-1.3
1,793	-	thrA	b0002	0.59	-0.9
1,868	+	thrA	b0002	0.62	-0.5
1,868	+	thrA	b0002	0.62	+0.5
1,871	+	thrA	b0002	0.62	-0.6
1,876	-	thrA	b0002	0.62	+0.3
1,881	-	thrA	b0002	0.63	-1.4
1,881	-	thrA	b0002	0.63	-1.9
1,929	+	thrA	b0002	0.65	-0.5
1,929	+	thrA	b0002	0.65	-0.2
1,937	-	thrA	b0002	0.65	-2.1
1,937	-	thrA	b0002	0.65	-1.3
2,076	+	thrA	b0002	0.71	-0.4
2,104	+	thrA	b0002	0.72	+0.3
2,104	+	thrA	b0002	0.72	-1.5
2,266	-	thrA	b0002	0.78	-1.0
2,266	-	thrA	b0002	0.78	-1.7
2,292	-	thrA	b0002	0.79	-0.1
2,294	+	thrA	b0002	0.79	-1.2
2,370	-	thrA	b0002	0.83	-1.6
2,370	-	thrA	b0002	0.83	+0.2
2,449	-	thrA	b0002	0.86	-0.5
2,590	-				-2.4
2,675	+				+0.0
2,682	+				+0.7
2,682	+				+1.3
2,684	+				+0.5
2,717	+				+0.0
2,744	-				+0.2
2,787	-				+0.4
2,787	-				+0.1
2,829	+				-0.7
2,847	+				-3.6
2,847	+				-1.2
2,906	-	thrB	b0003	0.11	+0.8
2,934	+	thrB	b0003	0.14	-0.9
2,963	-	thrB	b0003	0.17	-1.0
3,020	-	thrB	b0003	0.23	+0.8
3,023	+	thrB	b0003	0.24	-1.6
3,131	+	thrB	b0003	0.35	-1.8
3,144	-	thrB	b0003	0.37	-1.6
3,186	+	thrB	b0003	0.41	-0.3
3,246	+	thrB	b0003	0.48	-1.4
3,248	+	thrB	b0003	0.48	-1.3
3,256	+	thrB	b0003	0.49	-1.1
3,293	+	thrB	b0003	0.53	-0.4
3,301	-	thrB	b0003	0.54	+0.4
3,318	-	thrB	b0003	0.55	-0.7
3,411	+	thrB	b0003	0.65	-0.7
3,444	-	thrB	b0003	0.69	+0.1
3,444	-	thrB	b0003	0.69	-1.4
3,504	-	thrB	b0003	0.75	-0.3
3,504	-	thrB	b0003	0.75	+0.5
3,509	-	thrB	b0003	0.76	-0.6
3,511	+	thrB	b0003	0.76	-2.2
3,607	+	thrB	b0003	0.86	-0.2
3,634	-	thrB	b0003	0.89	+0.4
3,638	+	thrB	b0003	0.90	-0.5
3,638	+	thrB	b0003	0.90	+0.1
3,650	+				-3.6
3,769	+				-0.1
3,769	+				-0.9
3,792	-				-1.1