Strain Fitness in Escherichia coli BW25113 around b4335

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
4,561,726	+				-0.4
4,561,727	-				-2.5
4,561,727	-				-2.0
4,561,727	-				+0.8
4,561,765	+				-0.3
4,561,765	+				-0.1
4,561,771	+				+1.4
4,561,771	+				-0.5
4,561,773	-				-0.2
4,561,773	-				+0.2
4,561,773	-				-0.3
4,561,773	-				-0.0
4,561,773	-				-0.5
4,561,782	-				+0.3
4,561,782	-				+1.0
4,561,783	+				+0.2
4,561,797	+				-0.1
4,561,808	-				-1.5
4,561,810	+				-0.3
4,561,813	-				+1.2
4,561,813	-				-0.8
4,561,822	+				-0.6
4,561,883	-				-2.4
4,561,958	-				-0.1
4,561,959	-				-1.2
4,561,959	-				+1.1
4,561,970	-				+0.6
4,561,987	+				-1.6
4,561,987	+				+0.8
4,561,991	-				-0.9
4,562,022	+	yjiL	b4334	0.10	+0.0
4,562,092	-	yjiL	b4334	0.19	+0.1
4,562,105	+	yjiL	b4334	0.21	-2.6
4,562,105	+	yjiL	b4334	0.21	-0.9
4,562,145	-	yjiL	b4334	0.26	-1.7
4,562,160	+	yjiL	b4334	0.28	-0.7
4,562,160	+	yjiL	b4334	0.28	-0.6
4,562,205	-	yjiL	b4334	0.34	+0.2
4,562,265	+	yjiL	b4334	0.42	+0.4
4,562,265	+	yjiL	b4334	0.42	-0.0
4,562,385	-	yjiL	b4334	0.57	+0.7
4,562,385	-	yjiL	b4334	0.57	+0.0
4,562,517	+	yjiL	b4334	0.74	-0.5
4,562,517	+	yjiL	b4334	0.74	-2.0
4,562,536	-	yjiL	b4334	0.77	-0.2
4,562,662	-				+0.6
4,562,748	+				+0.0
4,562,753	+				-0.3
4,562,753	+				-0.3
4,562,758	+				+0.0
4,562,761	-				-1.8
4,562,818	-				-0.4
4,562,871	-	yjiM	b4335	0.13	+0.7
4,562,919	+	yjiM	b4335	0.17	+0.3
4,562,919	+	yjiM	b4335	0.17	+0.5
4,562,919	+	yjiM	b4335	0.17	-0.0
4,563,001	+	yjiM	b4335	0.24	-0.1
4,563,028	+	yjiM	b4335	0.27	-0.1
4,563,231	+	yjiM	b4335	0.44	+0.2
4,563,453	+	yjiM	b4335	0.63	+0.5
4,563,453	+	yjiM	b4335	0.63	+0.7
4,563,466	-	yjiM	b4335	0.65	+0.1
4,563,466	-	yjiM	b4335	0.65	+0.7
4,563,506	+	yjiM	b4335	0.68	+1.0
4,563,506	+	yjiM	b4335	0.68	+0.5
4,563,514	-	yjiM	b4335	0.69	+0.4
4,563,565	-	yjiM	b4335	0.73	-3.7
4,563,568	+	yjiM	b4335	0.73	-1.3
4,563,568	+	yjiM	b4335	0.73	+0.2
4,563,692	-	yjiM	b4335	0.84	+0.4
4,563,715	-	yjiM	b4335	0.86	-1.3
4,563,715	-	yjiM	b4335	0.86	+0.7
4,563,769	-				-0.7
4,563,818	-				+0.3
4,563,883	+				-1.1
4,563,968	-				-0.2
4,564,011	-				+0.8
4,564,138	+	yjiN	b4336	0.12	-0.6
4,564,138	+	yjiN	b4336	0.12	-2.5
4,564,205	+	yjiN	b4336	0.17	+2.6
4,564,205	+	yjiN	b4336	0.17	+0.5
4,564,222	-	yjiN	b4336	0.18	+0.5
4,564,364	-	yjiN	b4336	0.29	-0.3
4,564,466	+	yjiN	b4336	0.37	+0.0
4,564,468	+	yjiN	b4336	0.37	-2.4
4,564,468	+	yjiN	b4336	0.37	-0.1
4,564,470	+	yjiN	b4336	0.38	-0.4
4,564,566	+	yjiN	b4336	0.45	+0.6
4,564,574	-	yjiN	b4336	0.46	-0.2
4,564,579	-	yjiN	b4336	0.46	+1.8
4,564,607	+	yjiN	b4336	0.48	+0.5
4,564,650	+	yjiN	b4336	0.52	-2.1
4,564,650	+	yjiN	b4336	0.52	+1.5
4,564,682	-	yjiN	b4336	0.54	-0.1
4,564,720	+	yjiN	b4336	0.57	-0.2
4,564,740	+	yjiN	b4336	0.59	+0.8