Strain Fitness in Escherichia coli BW25113 around b3888

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
4,074,486	-	rbn	b3886	0.36	+0.2
4,074,493	+	rbn	b3886	0.37	-0.9
4,074,500	+	rbn	b3886	0.38	-0.5
4,074,500	+	rbn	b3886	0.38	-0.9
4,074,522	+	rbn	b3886	0.40	-1.0
4,074,522	+	rbn	b3886	0.40	-0.0
4,074,522	+	rbn	b3886	0.40	-0.5
4,074,522	+	rbn	b3886	0.40	+0.4
4,074,537	+	rbn	b3886	0.42	-1.4
4,074,537	+	rbn	b3886	0.42	-1.0
4,074,594	+	rbn	b3886	0.49	-2.9
4,074,638	+	rbn	b3886	0.54	-0.6
4,074,650	+	rbn	b3886	0.55	+0.7
4,074,658	-	rbn	b3886	0.56	-0.9
4,074,658	-	rbn	b3886	0.56	+1.0
4,074,665	+	rbn	b3886	0.57	-0.4
4,074,671	-	rbn	b3886	0.58	+0.9
4,074,677	-	rbn	b3886	0.58	-0.5
4,074,754	+	rbn	b3886	0.67	-0.2
4,074,759	-	rbn	b3886	0.68	+0.1
4,074,933	+	rbn	b3886	0.88	-0.2
4,074,933	+	rbn	b3886	0.88	+0.2
4,074,933	+	rbn	b3886	0.88	+0.1
4,074,933	+	rbn	b3886	0.88	+0.3
4,074,933	+	rbn	b3886	0.88	-0.6
4,074,933	-	rbn	b3886	0.88	-0.1
4,074,947	+	rbn	b3886	0.89	+0.0
4,074,952	+	rbn	b3886	0.90	+0.2
4,075,047	-				-0.6
4,075,080	+				-1.5
4,075,080	+				-2.7
4,075,087	+	dtd	b3887	0.11	-1.3
4,075,124	+	dtd	b3887	0.20	-0.7
4,075,124	-	dtd	b3887	0.20	+0.2
4,075,134	+	dtd	b3887	0.22	-0.4
4,075,168	+	dtd	b3887	0.30	+1.3
4,075,168	+	dtd	b3887	0.30	+0.1
4,075,170	+	dtd	b3887	0.30	-1.0
4,075,172	+	dtd	b3887	0.31	+0.0
4,075,176	-	dtd	b3887	0.32	+0.1
4,075,254	+	dtd	b3887	0.49	-0.1
4,075,254	+	dtd	b3887	0.49	+0.8
4,075,267	-	dtd	b3887	0.52	-0.7
4,075,281	+	dtd	b3887	0.55	-0.2
4,075,291	-	dtd	b3887	0.58	+0.1
4,075,316	+	dtd	b3887	0.63	+0.2
4,075,316	+	dtd	b3887	0.63	-2.8
4,075,436	+				+0.3
4,075,477	-				+0.4
4,075,481	+				-1.1
4,075,481	+				-2.4
4,075,496	+				-1.2
4,075,496	+				+0.2
4,075,510	+				+0.6
4,075,510	+				-1.2
4,075,512	-				+0.2
4,075,525	-				-0.4
4,075,525	-				-0.5
4,075,661	+	yiiD	b3888	0.19	+0.8
4,075,661	+	yiiD	b3888	0.19	+1.4
4,075,675	+	yiiD	b3888	0.21	+0.4
4,075,700	+	yiiD	b3888	0.23	+0.1
4,075,765	-	yiiD	b3888	0.30	-0.8
4,075,787	+	yiiD	b3888	0.32	+0.1
4,075,787	-	yiiD	b3888	0.32	+0.8
4,075,794	+	yiiD	b3888	0.33	+0.5
4,075,794	+	yiiD	b3888	0.33	+0.5
4,075,794	+	yiiD	b3888	0.33	+0.1
4,075,794	+	yiiD	b3888	0.33	+0.1
4,075,801	-	yiiD	b3888	0.33	-0.2
4,075,829	-	yiiD	b3888	0.36	-0.2
4,075,829	-	yiiD	b3888	0.36	-0.3
4,075,834	+	yiiD	b3888	0.37	+1.1
4,075,902	+	yiiD	b3888	0.43	+1.3
4,075,910	-	yiiD	b3888	0.44	+0.7
4,075,910	-	yiiD	b3888	0.44	+1.2
4,075,914	+	yiiD	b3888	0.45	+1.1
4,075,970	+	yiiD	b3888	0.50	+1.2
4,075,970	+	yiiD	b3888	0.50	-0.8
4,075,999	+	yiiD	b3888	0.53	+0.2
4,076,013	+	yiiD	b3888	0.55	+0.6
4,076,032	-	yiiD	b3888	0.57	+0.3
4,076,059	+	yiiD	b3888	0.59	+0.7
4,076,059	+	yiiD	b3888	0.59	+0.9
4,076,089	-	yiiD	b3888	0.62	-0.4
4,076,089	-	yiiD	b3888	0.62	+0.5
4,076,158	+	yiiD	b3888	0.69	-0.0
4,076,171	+	yiiD	b3888	0.71	+0.2
4,076,239	-	yiiD	b3888	0.77	+0.5
4,076,285	+	yiiD	b3888	0.82	+0.4
4,076,285	+	yiiD	b3888	0.82	+0.8
4,076,353	-	yiiD	b3888	0.89	+0.8
4,076,363	+				-0.2
4,076,363	+				-0.1
4,076,378	+				+0.7
4,076,384	+				-0.3
4,076,384	+				-2.1
4,076,386	+				+0.6
4,076,395	+				+0.5
4,076,395	+				+0.2
4,076,404	-				-1.3
4,076,430	+				+0.1
4,076,430	+				+0.1
4,076,430	+				-0.3
4,076,430	+				+0.2
4,076,430	+				+0.7
4,076,430	+				-3.7
4,076,432	+				+0.4
4,076,432	+				+0.6
4,076,432	+				+0.4
4,076,438	-				-1.0
4,076,440	+				-2.8
4,076,440	+				-0.8
4,076,441	+				-0.0
4,076,448	-				+0.8
4,076,448	-				-0.3
4,076,451	+				-0.2
4,076,451	+				-0.2
4,076,451	+				-0.4
4,076,453	+				+0.2
4,076,456	+				-0.3
4,076,461	+				-0.6
4,076,462	+				-0.2
4,076,462	+				+0.0
4,076,462	+				-0.3
4,076,462	+				-0.4
4,076,464	+				-0.4
4,076,464	+				+0.1
4,076,464	+				+0.4
4,076,464	+				+0.4
4,076,468	+				-0.2
4,076,468	+				+1.1
4,076,468	+				+0.7
4,076,470	-				+2.8
4,076,473	+				+1.4
4,076,473	+				-0.4
4,076,473	+				+0.2
4,076,478	+				+0.1
4,076,478	+				+0.5
4,076,478	+				+0.1
4,076,487	+				-1.4
4,076,487	+				-2.0
4,076,491	+				-0.2
4,076,491	+				+1.3
4,076,491	+				+0.5
4,076,506	+				-0.0
4,076,563	+				+1.8
4,076,563	+				-0.1
4,076,564	+				+0.0
4,076,564	+				-0.6
4,076,568	+				+0.7
4,076,568	+				-0.8
4,076,570	+				+2.8
4,076,570	+				+1.8
4,076,570	+				+2.8
4,076,575	+				+2.8
4,076,581	-				+0.5
4,076,582	-				+1.2
4,076,583	+				-1.0
4,076,583	+				+0.5
4,076,586	+				+1.6
4,076,586	+				-1.1
4,076,586	+				+1.2
4,076,592	-				+2.8
4,076,596	+				-0.8
4,076,596	+				-1.6
4,076,678	-				-1.0
4,076,678	-				-0.8
4,076,685	+				+1.8
4,076,794	-				+1.8
4,076,975	+				+1.2
4,076,978	+				+1.2
4,077,045	-				+1.8
4,077,365	-	yiiE	b3889	0.21	+2.8
4,077,422	+	yiiE	b3889	0.48	-0.2
4,077,422	+	yiiE	b3889	0.48	+1.8
4,077,422	+	yiiE	b3889	0.48	+0.5
4,077,422	+	yiiE	b3889	0.48	+2.8
4,077,422	+	yiiE	b3889	0.48	+1.8
4,077,448	+	yiiE	b3889	0.60	+1.2
4,077,448	+	yiiE	b3889	0.60	+1.2