Strain Fitness in Escherichia coli BW25113 around b2959
Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep A; time point 1 |
---|---|---|---|---|---|
remove | |||||
3,099,052 | + | yggN | b2958 | 0.17 | +1.0 |
3,099,062 | + | yggN | b2958 | 0.19 | +0.8 |
3,099,190 | + | yggN | b2958 | 0.37 | -1.2 |
3,099,216 | + | yggN | b2958 | 0.40 | -0.6 |
3,099,216 | + | yggN | b2958 | 0.40 | +0.6 |
3,099,347 | + | yggN | b2958 | 0.58 | +0.2 |
3,099,350 | - | yggN | b2958 | 0.59 | +0.5 |
3,099,350 | - | yggN | b2958 | 0.59 | +0.6 |
3,099,366 | + | yggN | b2958 | 0.61 | +0.1 |
3,099,366 | + | yggN | b2958 | 0.61 | -0.3 |
3,099,482 | - | yggN | b2958 | 0.77 | +0.4 |
3,099,484 | - | yggN | b2958 | 0.78 | -0.1 |
3,099,533 | + | yggN | b2958 | 0.84 | +0.2 |
3,099,564 | + | yggN | b2958 | 0.89 | -0.5 |
3,099,564 | + | yggN | b2958 | 0.89 | -0.8 |
3,099,564 | + | yggN | b2958 | 0.89 | +0.6 |
3,099,569 | + | yggN | b2958 | 0.89 | +0.8 |
3,099,868 | - | yggL | b2959 | 0.12 | +2.7 |
3,099,907 | + | yggL | b2959 | 0.24 | +0.5 |
3,099,928 | - | yggL | b2959 | 0.30 | -0.1 |
3,100,069 | - | yggL | b2959 | 0.73 | +0.8 |
3,100,069 | - | yggL | b2959 | 0.73 | +0.9 |
3,100,096 | + | yggL | b2959 | 0.82 | +0.3 |
3,100,181 | + | -1.1 | |||
3,100,187 | - | +0.6 | |||
3,100,187 | - | -0.3 | |||
3,100,189 | - | +0.6 | |||
3,100,189 | - | +0.4 | |||
3,100,250 | + | yggH | b2960 | 0.13 | +0.6 |
3,100,250 | + | yggH | b2960 | 0.13 | -2.1 |
3,100,258 | - | yggH | b2960 | 0.14 | +0.0 |
3,100,258 | - | yggH | b2960 | 0.14 | +0.3 |
3,100,258 | - | yggH | b2960 | 0.14 | +1.2 |
3,100,260 | - | yggH | b2960 | 0.15 | +0.8 |
3,100,393 | - | yggH | b2960 | 0.33 | +0.4 |
3,100,406 | - | yggH | b2960 | 0.35 | -0.5 |
3,100,441 | + | yggH | b2960 | 0.40 | -0.0 |
3,100,441 | + | yggH | b2960 | 0.40 | +0.1 |
3,100,474 | + | yggH | b2960 | 0.44 | -3.2 |
3,100,521 | - | yggH | b2960 | 0.51 | +0.6 |
3,100,521 | - | yggH | b2960 | 0.51 | -0.5 |
3,100,568 | - | yggH | b2960 | 0.57 | -0.2 |
3,100,600 | + | yggH | b2960 | 0.62 | +0.2 |
3,100,600 | + | yggH | b2960 | 0.62 | +1.0 |
3,100,616 | - | yggH | b2960 | 0.64 | +0.6 |
3,100,827 | - | +0.6 | |||
3,100,829 | - | +1.5 | |||
3,100,974 | + | -0.8 | |||
3,100,974 | + | +1.6 | |||
3,100,974 | + | -0.2 | |||
3,101,012 | - | +0.1 | |||
3,101,070 | - | +0.3 | |||
3,101,070 | - | -0.3 | |||
3,101,122 | + | +0.4 | |||
3,101,122 | + | +0.3 | |||
3,101,124 | + | -0.5 | |||
3,101,124 | + | +0.3 |
Or see this region's nucleotide sequence