Strain Fitness in Escherichia coli BW25113 around b2433
Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep A; time point 1 |
---|---|---|---|---|---|
remove | |||||
2,548,322 | - | b2431 | b2431 | 0.73 | -0.0 |
2,548,537 | - | -2.0 | |||
2,548,537 | - | -0.2 | |||
2,548,895 | + | yfeY | b2432 | 0.40 | -0.8 |
2,549,078 | + | yfeY | b2432 | 0.72 | -0.1 |
2,549,078 | + | yfeY | b2432 | 0.72 | +0.1 |
2,549,210 | + | -1.3 | |||
2,549,253 | - | -0.3 | |||
2,549,266 | - | -0.3 | |||
2,549,348 | + | b2433 | b2433 | 0.11 | -1.4 |
2,549,388 | + | b2433 | b2433 | 0.20 | -1.8 |
2,549,645 | + | b2433 | b2433 | 0.77 | +0.1 |
2,549,680 | + | b2433 | b2433 | 0.85 | -3.0 |
2,549,680 | + | b2433 | b2433 | 0.85 | -1.5 |
2,549,746 | - | +0.8 | |||
2,549,795 | + | b2434 | b2434 | 0.14 | -2.2 |
2,549,833 | - | b2434 | b2434 | 0.23 | +0.1 |
2,549,864 | + | b2434 | b2434 | 0.30 | -0.0 |
2,550,001 | + | b2434 | b2434 | 0.62 | -0.8 |
2,550,037 | + | b2434 | b2434 | 0.71 | +0.1 |
2,550,357 | + | -2.8 | |||
2,550,357 | + | +0.1 | |||
2,550,381 | + | -1.8 | |||
2,550,597 | - | amiA | b2435 | 0.26 | +0.1 |
2,550,631 | - | amiA | b2435 | 0.30 | -0.0 |
2,550,747 | + | amiA | b2435 | 0.43 | +0.2 |
Or see this region's nucleotide sequence