Strain Fitness in Escherichia coli BW25113 around b2027
Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep A; time point 1 |
---|---|---|---|---|---|
remove | |||||
2,094,596 | + | -1.5 | |||
2,094,596 | + | +0.2 | |||
2,094,647 | + | +1.2 | |||
2,094,712 | - | hisI | b2026 | 0.12 | -1.8 |
2,094,712 | - | hisI | b2026 | 0.12 | +0.9 |
2,094,716 | + | hisI | b2026 | 0.13 | -0.0 |
2,094,869 | + | hisI | b2026 | 0.38 | -1.1 |
2,094,907 | - | hisI | b2026 | 0.44 | -0.4 |
2,094,907 | - | hisI | b2026 | 0.44 | +0.0 |
2,095,032 | + | hisI | b2026 | 0.64 | -1.3 |
2,095,033 | + | hisI | b2026 | 0.65 | -0.6 |
2,095,033 | + | hisI | b2026 | 0.65 | -0.1 |
2,095,124 | + | hisI | b2026 | 0.79 | +0.1 |
2,095,167 | + | hisI | b2026 | 0.86 | -0.7 |
2,095,202 | - | -2.0 | |||
2,095,231 | + | -0.3 | |||
2,095,386 | - | +0.2 | |||
2,095,490 | + | wzzB | b2027 | 0.15 | +1.2 |
2,095,494 | + | wzzB | b2027 | 0.15 | +0.2 |
2,095,586 | - | wzzB | b2027 | 0.25 | +1.0 |
2,095,586 | - | wzzB | b2027 | 0.25 | +1.4 |
2,095,606 | - | wzzB | b2027 | 0.27 | -0.6 |
2,095,719 | - | wzzB | b2027 | 0.38 | -0.3 |
2,095,719 | - | wzzB | b2027 | 0.38 | +0.8 |
2,095,729 | - | wzzB | b2027 | 0.39 | +0.4 |
2,095,819 | + | wzzB | b2027 | 0.48 | -3.4 |
2,095,819 | + | wzzB | b2027 | 0.48 | +1.0 |
2,095,900 | + | wzzB | b2027 | 0.57 | +1.3 |
2,095,900 | + | wzzB | b2027 | 0.57 | +1.8 |
2,096,075 | + | wzzB | b2027 | 0.74 | -1.4 |
2,096,075 | + | wzzB | b2027 | 0.74 | +1.0 |
2,096,102 | + | wzzB | b2027 | 0.77 | +0.4 |
2,096,163 | - | wzzB | b2027 | 0.83 | -1.1 |
2,096,458 | + | +1.6 | |||
2,096,458 | + | -1.7 | |||
2,096,467 | + | +0.0 | |||
2,096,480 | + | -1.5 | |||
2,096,480 | + | -0.1 | |||
2,096,486 | - | -0.2 | |||
2,096,496 | + | +0.1 | |||
2,096,498 | + | +0.4 | |||
2,096,498 | + | +0.1 | |||
2,096,519 | + | +0.6 | |||
2,096,633 | + | ugd | b2028 | 0.14 | +0.8 |
2,096,634 | + | ugd | b2028 | 0.14 | -0.3 |
2,096,634 | + | ugd | b2028 | 0.14 | -3.4 |
2,096,638 | - | ugd | b2028 | 0.14 | +0.1 |
2,096,638 | - | ugd | b2028 | 0.14 | -1.2 |
2,096,641 | - | ugd | b2028 | 0.15 | +0.7 |
2,096,641 | - | ugd | b2028 | 0.15 | -0.8 |
2,096,669 | - | ugd | b2028 | 0.17 | +0.3 |
2,096,683 | + | ugd | b2028 | 0.18 | -2.5 |
2,096,746 | + | ugd | b2028 | 0.24 | -0.7 |
2,096,846 | - | ugd | b2028 | 0.32 | -0.6 |
2,096,846 | - | ugd | b2028 | 0.32 | -0.5 |
2,096,850 | + | ugd | b2028 | 0.32 | +0.3 |
2,096,858 | - | ugd | b2028 | 0.33 | +0.4 |
2,096,861 | - | ugd | b2028 | 0.33 | +0.2 |
2,096,862 | - | ugd | b2028 | 0.34 | -0.4 |
2,096,862 | - | ugd | b2028 | 0.34 | +0.5 |
2,096,880 | + | ugd | b2028 | 0.35 | +0.2 |
2,096,909 | + | ugd | b2028 | 0.38 | +1.1 |
2,096,909 | + | ugd | b2028 | 0.38 | -0.2 |
2,096,917 | - | ugd | b2028 | 0.38 | +1.2 |
2,096,917 | - | ugd | b2028 | 0.38 | +0.8 |
2,096,918 | - | ugd | b2028 | 0.38 | +1.0 |
2,096,918 | - | ugd | b2028 | 0.38 | -1.9 |
2,096,922 | + | ugd | b2028 | 0.39 | -3.3 |
2,096,922 | + | ugd | b2028 | 0.39 | +1.2 |
2,096,998 | - | ugd | b2028 | 0.45 | -1.6 |
2,097,030 | - | ugd | b2028 | 0.48 | +0.2 |
2,097,035 | - | ugd | b2028 | 0.48 | -1.0 |
2,097,058 | - | ugd | b2028 | 0.50 | -1.4 |
2,097,074 | + | ugd | b2028 | 0.52 | -0.2 |
2,097,111 | + | ugd | b2028 | 0.55 | -2.0 |
2,097,111 | + | ugd | b2028 | 0.55 | +0.2 |
2,097,111 | + | ugd | b2028 | 0.55 | +0.3 |
2,097,113 | + | ugd | b2028 | 0.55 | +0.2 |
2,097,119 | - | ugd | b2028 | 0.56 | -0.5 |
2,097,121 | + | ugd | b2028 | 0.56 | -0.2 |
2,097,121 | - | ugd | b2028 | 0.56 | +0.7 |
2,097,129 | - | ugd | b2028 | 0.56 | -0.5 |
2,097,141 | + | ugd | b2028 | 0.57 | -0.7 |
2,097,166 | - | ugd | b2028 | 0.60 | +2.3 |
2,097,166 | - | ugd | b2028 | 0.60 | -0.2 |
2,097,195 | + | ugd | b2028 | 0.62 | -2.2 |
2,097,195 | + | ugd | b2028 | 0.62 | +0.7 |
2,097,271 | + | ugd | b2028 | 0.69 | +0.7 |
2,097,278 | + | ugd | b2028 | 0.69 | +0.5 |
2,097,297 | + | ugd | b2028 | 0.71 | +0.4 |
Or see this region's nucleotide sequence