Strain Fitness in Escherichia coli BW25113 around b1861
Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep A; time point 1 |
---|---|---|---|---|---|
remove | |||||
1,942,423 | + | -1.7 | |||
1,942,445 | - | +0.3 | |||
1,942,446 | - | -2.0 | |||
1,942,806 | + | ruvB | b1860 | 0.43 | -1.6 |
1,942,985 | + | ruvB | b1860 | 0.61 | +0.1 |
1,943,892 | + | ruvA | b1861 | 0.82 | -1.9 |
1,943,919 | - | ruvA | b1861 | 0.87 | -1.2 |
1,943,934 | - | ruvA | b1861 | 0.89 | +0.1 |
1,943,990 | - | -1.4 | |||
1,943,996 | + | +2.0 | |||
1,943,996 | + | +0.3 | |||
1,944,021 | + | +0.0 | |||
1,944,102 | + | -1.4 | |||
1,944,102 | + | +1.3 | |||
1,944,137 | + | -0.7 | |||
1,944,333 | - | +0.3 | |||
1,944,333 | - | +0.1 | |||
1,944,511 | - | yebB | b1862 | 0.39 | +2.3 |
1,944,560 | - | yebB | b1862 | 0.47 | -0.0 |
1,944,582 | + | yebB | b1862 | 0.51 | -1.7 |
1,944,622 | + | yebB | b1862 | 0.58 | +0.5 |
1,944,625 | - | yebB | b1862 | 0.58 | -0.3 |
1,944,625 | - | yebB | b1862 | 0.58 | +0.2 |
1,944,625 | - | yebB | b1862 | 0.58 | +0.8 |
1,944,669 | - | yebB | b1862 | 0.65 | +1.6 |
1,944,674 | - | yebB | b1862 | 0.66 | +0.3 |
1,944,723 | - | yebB | b1862 | 0.74 | -1.1 |
1,944,818 | + | -2.4 | |||
1,944,818 | + | -1.4 | |||
1,944,826 | - | +0.8 | |||
1,944,826 | - | +2.8 | |||
1,944,829 | + | -1.6 | |||
1,944,846 | - | +0.2 | |||
1,944,885 | - | -0.9 | |||
1,944,885 | - | -0.3 | |||
1,944,895 | - | +0.5 | |||
1,944,908 | + | -0.9 | |||
1,944,916 | - | -0.0 |
Or see this region's nucleotide sequence