Strain Fitness in Escherichia coli BW25113 around b1082

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgJ and flgK are separated by 65 nucleotidesflgK and flgL are separated by 11 nucleotides b1081: flgJ - flagellar biosynthesis protein FlgJ (NCBI), at 1,136,594 to 1,137,535 flgJ b1082: flgK - flagellar hook-associated protein K (NCBI), at 1,137,601 to 1,139,244 flgK b1083: flgL - flagellar hook-associated protein L (NCBI), at 1,139,256 to 1,140,209 flgL Position (kb) 1137 1138 1139 1140Strain fitness (log2 ratio) -3 -2 -1 0 1at 1136.620 kb on - strandat 1136.622 kb on - strandat 1136.622 kb on - strandat 1136.776 kb on + strand, within flgJat 1136.776 kb on + strand, within flgJat 1136.810 kb on + strand, within flgJat 1136.810 kb on + strand, within flgJat 1136.821 kb on + strand, within flgJat 1136.854 kb on - strand, within flgJat 1136.867 kb on - strand, within flgJat 1136.957 kb on - strand, within flgJat 1137.015 kb on - strand, within flgJat 1137.015 kb on - strand, within flgJat 1137.122 kb on - strand, within flgJat 1137.373 kb on - strand, within flgJat 1137.452 kb on + strandat 1137.684 kb on + strandat 1137.691 kb on - strandat 1137.691 kb on - strandat 1137.705 kb on - strandat 1137.740 kb on - strandat 1138.112 kb on - strand, within flgKat 1138.255 kb on + strand, within flgKat 1138.306 kb on + strand, within flgKat 1138.350 kb on + strand, within flgKat 1138.362 kb on + strand, within flgKat 1138.369 kb on + strand, within flgKat 1138.422 kb on + strand, within flgKat 1138.422 kb on + strand, within flgKat 1138.469 kb on + strand, within flgKat 1138.530 kb on - strand, within flgKat 1139.018 kb on - strand, within flgKat 1139.153 kb on - strandat 1139.172 kb on + strandat 1139.261 kb on + strandat 1139.261 kb on + strandat 1139.311 kb on - strandat 1139.311 kb on - strandat 1139.337 kb on + strandat 1139.413 kb on + strand, within flgLat 1139.413 kb on + strand, within flgLat 1139.498 kb on - strand, within flgLat 1139.498 kb on - strand, within flgLat 1139.555 kb on - strand, within flgLat 1139.710 kb on - strand, within flgLat 1139.734 kb on + strand, within flgLat 1139.977 kb on + strand, within flgLat 1140.119 kb on + strandat 1140.127 kb on - strandat 1140.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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1,136,620 - +1.1
1,136,622 - +0.0
1,136,622 - +0.5
1,136,776 + flgJ b1081 0.19 -0.5
1,136,776 + flgJ b1081 0.19 +1.1
1,136,810 + flgJ b1081 0.23 -2.1
1,136,810 + flgJ b1081 0.23 -1.4
1,136,821 + flgJ b1081 0.24 +0.1
1,136,854 - flgJ b1081 0.28 -0.5
1,136,867 - flgJ b1081 0.29 -1.2
1,136,957 - flgJ b1081 0.39 +0.1
1,137,015 - flgJ b1081 0.45 +1.1
1,137,015 - flgJ b1081 0.45 +0.5
1,137,122 - flgJ b1081 0.56 -0.5
1,137,373 - flgJ b1081 0.83 -1.1
1,137,452 + -0.7
1,137,684 + -0.6
1,137,691 - -0.1
1,137,691 - +0.1
1,137,705 - +0.3
1,137,740 - -0.2
1,138,112 - flgK b1082 0.31 -0.5
1,138,255 + flgK b1082 0.40 -0.1
1,138,306 + flgK b1082 0.43 +0.3
1,138,350 + flgK b1082 0.46 -3.0
1,138,362 + flgK b1082 0.46 -1.6
1,138,369 + flgK b1082 0.47 +0.5
1,138,422 + flgK b1082 0.50 -2.0
1,138,422 + flgK b1082 0.50 -0.8
1,138,469 + flgK b1082 0.53 -1.9
1,138,530 - flgK b1082 0.57 +0.2
1,139,018 - flgK b1082 0.86 -1.9
1,139,153 - +0.7
1,139,172 + +0.3
1,139,261 + +0.3
1,139,261 + +0.8
1,139,311 - -0.2
1,139,311 - +1.7
1,139,337 + +0.3
1,139,413 + flgL b1083 0.16 -0.2
1,139,413 + flgL b1083 0.16 +0.8
1,139,498 - flgL b1083 0.25 +0.9
1,139,498 - flgL b1083 0.25 -2.6
1,139,555 - flgL b1083 0.31 +0.8
1,139,710 - flgL b1083 0.48 -0.3
1,139,734 + flgL b1083 0.50 +1.0
1,139,977 + flgL b1083 0.76 +0.6
1,140,119 + +0.4
1,140,127 - -0.6
1,140,127 - +1.1

Or see this region's nucleotide sequence