Strain Fitness in Escherichia coli BW25113 around b1082
Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep A; time point 1 |
---|---|---|---|---|---|
remove | |||||
1,136,620 | - | +1.1 | |||
1,136,622 | - | +0.0 | |||
1,136,622 | - | +0.5 | |||
1,136,776 | + | flgJ | b1081 | 0.19 | -0.5 |
1,136,776 | + | flgJ | b1081 | 0.19 | +1.1 |
1,136,810 | + | flgJ | b1081 | 0.23 | -2.1 |
1,136,810 | + | flgJ | b1081 | 0.23 | -1.4 |
1,136,821 | + | flgJ | b1081 | 0.24 | +0.1 |
1,136,854 | - | flgJ | b1081 | 0.28 | -0.5 |
1,136,867 | - | flgJ | b1081 | 0.29 | -1.2 |
1,136,957 | - | flgJ | b1081 | 0.39 | +0.1 |
1,137,015 | - | flgJ | b1081 | 0.45 | +1.1 |
1,137,015 | - | flgJ | b1081 | 0.45 | +0.5 |
1,137,122 | - | flgJ | b1081 | 0.56 | -0.5 |
1,137,373 | - | flgJ | b1081 | 0.83 | -1.1 |
1,137,452 | + | -0.7 | |||
1,137,684 | + | -0.6 | |||
1,137,691 | - | -0.1 | |||
1,137,691 | - | +0.1 | |||
1,137,705 | - | +0.3 | |||
1,137,740 | - | -0.2 | |||
1,138,112 | - | flgK | b1082 | 0.31 | -0.5 |
1,138,255 | + | flgK | b1082 | 0.40 | -0.1 |
1,138,306 | + | flgK | b1082 | 0.43 | +0.3 |
1,138,350 | + | flgK | b1082 | 0.46 | -3.0 |
1,138,362 | + | flgK | b1082 | 0.46 | -1.6 |
1,138,369 | + | flgK | b1082 | 0.47 | +0.5 |
1,138,422 | + | flgK | b1082 | 0.50 | -2.0 |
1,138,422 | + | flgK | b1082 | 0.50 | -0.8 |
1,138,469 | + | flgK | b1082 | 0.53 | -1.9 |
1,138,530 | - | flgK | b1082 | 0.57 | +0.2 |
1,139,018 | - | flgK | b1082 | 0.86 | -1.9 |
1,139,153 | - | +0.7 | |||
1,139,172 | + | +0.3 | |||
1,139,261 | + | +0.3 | |||
1,139,261 | + | +0.8 | |||
1,139,311 | - | -0.2 | |||
1,139,311 | - | +1.7 | |||
1,139,337 | + | +0.3 | |||
1,139,413 | + | flgL | b1083 | 0.16 | -0.2 |
1,139,413 | + | flgL | b1083 | 0.16 | +0.8 |
1,139,498 | - | flgL | b1083 | 0.25 | +0.9 |
1,139,498 | - | flgL | b1083 | 0.25 | -2.6 |
1,139,555 | - | flgL | b1083 | 0.31 | +0.8 |
1,139,710 | - | flgL | b1083 | 0.48 | -0.3 |
1,139,734 | + | flgL | b1083 | 0.50 | +1.0 |
1,139,977 | + | flgL | b1083 | 0.76 | +0.6 |
1,140,119 | + | +0.4 | |||
1,140,127 | - | -0.6 | |||
1,140,127 | - | +1.1 |
Or see this region's nucleotide sequence