Strain Fitness in Escherichia coli BW25113 around b3572

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,736,776	+	malS	b3571	0.62	+0.4
3,736,845	-	malS	b3571	0.65	+0.1
3,736,931	-	malS	b3571	0.69	-0.1
3,736,931	-	malS	b3571	0.69	-0.1
3,737,037	-	malS	b3571	0.75	+0.0
3,737,040	+	malS	b3571	0.75	-0.1
3,737,040	+	malS	b3571	0.75	-0.2
3,737,099	+	malS	b3571	0.78	-0.3
3,737,179	+	malS	b3571	0.82	-0.2
3,737,201	-	malS	b3571	0.83	+0.6
3,737,253	-	malS	b3571	0.85	+0.3
3,737,318	+	malS	b3571	0.89	+0.0
3,737,345	-	malS	b3571	0.90	+0.7
3,737,351	-				-0.4
3,737,351	-				-0.1
3,737,353	-				-0.3
3,737,353	-				+0.9
3,737,353	-				+0.7
3,737,353	-				-0.1
3,737,364	-				-0.3
3,737,364	-				+1.1
3,737,416	-				+0.2
3,737,455	+				+0.3
3,737,455	+				-0.3
3,737,484	+				-0.4
3,737,484	+				-0.1
3,737,484	+				-0.4
3,737,513	+				+0.3
3,737,529	-				+0.7
3,737,529	-				-0.3
3,737,553	-				+1.0
3,737,592	+				+0.1
3,737,636	-				-0.5
3,737,636	-				-0.1
3,737,645	+				-0.1
3,737,645	+				+0.5
3,737,645	+				+0.1
3,737,653	-				+0.1
3,737,653	-				-1.0
3,737,789	-				-1.1
3,737,824	+				-0.2
3,737,892	-	avtA	b3572	0.13	+0.3
3,737,892	-	avtA	b3572	0.13	-0.8
3,737,905	-	avtA	b3572	0.14	+0.1
3,737,918	+	avtA	b3572	0.15	-0.5
3,737,921	+	avtA	b3572	0.15	-0.6
3,737,921	+	avtA	b3572	0.15	+0.3
3,737,926	-	avtA	b3572	0.16	-0.2
3,737,926	-	avtA	b3572	0.16	-0.2
3,737,942	+	avtA	b3572	0.17	-0.0
3,737,949	+	avtA	b3572	0.18	+0.7
3,737,963	+	avtA	b3572	0.19	+0.1
3,737,971	-	avtA	b3572	0.19	-2.4
3,737,971	-	avtA	b3572	0.19	-0.7
3,737,971	-	avtA	b3572	0.19	-0.3
3,738,016	+	avtA	b3572	0.23	-0.1
3,738,160	-	avtA	b3572	0.34	-0.4
3,738,219	+	avtA	b3572	0.39	+0.4
3,738,268	-	avtA	b3572	0.43	+0.9
3,738,296	+	avtA	b3572	0.45	-0.2
3,738,330	+	avtA	b3572	0.48	+0.2
3,738,335	+	avtA	b3572	0.48	-0.0
3,738,338	-	avtA	b3572	0.49	-0.2
3,738,392	-	avtA	b3572	0.53	-1.1
3,738,392	-	avtA	b3572	0.53	-0.5
3,738,538	+	avtA	b3572	0.65	-0.7
3,738,538	+	avtA	b3572	0.65	+1.1
3,738,568	-	avtA	b3572	0.67	-0.4
3,738,586	+	avtA	b3572	0.68	-1.0
3,738,602	-	avtA	b3572	0.70	+0.3
3,738,604	-	avtA	b3572	0.70	-0.2
3,738,604	-	avtA	b3572	0.70	+0.2
3,738,662	+	avtA	b3572	0.74	-0.4
3,738,662	+	avtA	b3572	0.74	-0.7
3,738,752	+	avtA	b3572	0.82	+0.1
3,738,760	-	avtA	b3572	0.82	-0.7
3,738,767	-	avtA	b3572	0.83	-0.2
3,738,767	-	avtA	b3572	0.83	+0.2
3,738,774	+	avtA	b3572	0.83	-0.8
3,738,789	+	avtA	b3572	0.85	-0.7
3,738,822	+	avtA	b3572	0.87	-1.1
3,738,825	-	avtA	b3572	0.87	+0.2
3,738,825	-	avtA	b3572	0.87	-0.8
3,738,867	+				+0.0
3,739,079	+				-0.0
3,739,079	+				+0.7
3,739,101	+				-0.2
3,739,101	+				+0.1
3,739,176	+				+1.6
3,739,178	+				+0.2
3,739,207	+	yiaI	b3573	0.16	+0.1
3,739,209	+	yiaI	b3573	0.16	+0.4
3,739,337	+	yiaI	b3573	0.43	-0.1
3,739,443	-	yiaI	b3573	0.66	-0.6
3,739,443	-	yiaI	b3573	0.66	-0.1
3,739,456	-	yiaI	b3573	0.68	-0.6
3,739,456	-	yiaI	b3573	0.68	-0.1
3,739,490	-	yiaI	b3573	0.76	-0.2
3,739,499	-	yiaI	b3573	0.77	+0.3
3,739,499	-	yiaI	b3573	0.77	+0.5
3,739,546	-	yiaI	b3573	0.87	-0.3
3,739,548	+	yiaI	b3573	0.88	-0.8
3,739,593	-				-0.6
3,739,600	+				-0.0
3,739,614	-				-0.2
3,739,642	-				-1.1
3,739,642	-				-0.4
3,739,726	-				-0.3
3,739,752	+				-0.7
3,739,756	+				-0.4
3,739,771	+				-0.0
3,739,853	-	yiaJ	b3574	0.17	-0.1
3,739,859	+	yiaJ	b3574	0.18	+0.8
3,739,896	-	yiaJ	b3574	0.22	+0.8
3,739,920	+	yiaJ	b3574	0.25	-0.7
3,739,928	-	yiaJ	b3574	0.26	-0.8
3,739,928	-	yiaJ	b3574	0.26	-2.4