Strain Fitness in Escherichia coli BW25113 around b3367

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,494,041	-	nirB	b3365	0.79	+0.3
3,494,107	-	nirB	b3365	0.82	+0.3
3,494,107	-	nirB	b3365	0.82	-0.1
3,494,247	+	nirB	b3365	0.87	+0.6
3,494,347	+				+0.0
3,494,395	+				-0.5
3,494,434	+				+0.6
3,494,434	+				+0.2
3,494,452	-				+0.4
3,494,459	+				+0.0
3,494,488	+				+0.3
3,494,499	-				+0.1
3,494,499	-				+0.4
3,494,507	-				+0.1
3,494,507	-				-0.3
3,494,507	-				+0.4
3,494,540	-				+0.6
3,494,548	+				-1.2
3,494,564	-				-0.0
3,494,577	-				-0.0
3,494,577	-				+0.6
3,494,646	-	nirD	b3366	0.22	-0.1
3,494,742	-	nirD	b3366	0.52	+0.1
3,494,760	+	nirD	b3366	0.57	-0.6
3,494,765	+	nirD	b3366	0.59	+0.1
3,494,765	+	nirD	b3366	0.59	-0.6
3,494,765	+	nirD	b3366	0.59	+0.5
3,494,779	-	nirD	b3366	0.63	-0.0
3,494,888	-				+0.3
3,494,888	-				+0.4
3,494,939	+				+0.6
3,494,939	+				-1.1
3,494,947	-				-0.1
3,494,947	-				-0.7
3,495,048	+				+0.4
3,495,056	-				+0.4
3,495,062	-				+0.7
3,495,071	+				-0.6
3,495,079	-				-0.2
3,495,113	+	nirC	b3367	0.11	+0.7
3,495,113	+	nirC	b3367	0.11	+1.6
3,495,123	+	nirC	b3367	0.12	-0.7
3,495,124	-	nirC	b3367	0.12	+0.7
3,495,124	-	nirC	b3367	0.12	+0.1
3,495,129	+	nirC	b3367	0.13	-0.7
3,495,129	+	nirC	b3367	0.13	+0.9
3,495,131	+	nirC	b3367	0.13	-0.1
3,495,148	-	nirC	b3367	0.15	+0.6
3,495,148	-	nirC	b3367	0.15	+0.2
3,495,148	-	nirC	b3367	0.15	-0.3
3,495,148	-	nirC	b3367	0.15	-1.0
3,495,182	+	nirC	b3367	0.19	-0.2
3,495,195	-	nirC	b3367	0.21	+0.4
3,495,197	+	nirC	b3367	0.21	-0.5
3,495,197	+	nirC	b3367	0.21	-0.9
3,495,251	+	nirC	b3367	0.28	-0.1
3,495,251	+	nirC	b3367	0.28	-0.2
3,495,251	+	nirC	b3367	0.28	-0.2
3,495,259	-	nirC	b3367	0.29	+0.2
3,495,271	-	nirC	b3367	0.30	-0.6
3,495,308	+	nirC	b3367	0.35	-0.9
3,495,308	+	nirC	b3367	0.35	-1.0
3,495,311	-	nirC	b3367	0.35	+0.2
3,495,311	-	nirC	b3367	0.35	-0.2
3,495,353	-	nirC	b3367	0.41	+0.3
3,495,358	+	nirC	b3367	0.41	-0.2
3,495,388	+	nirC	b3367	0.45	-0.4
3,495,388	+	nirC	b3367	0.45	-0.3
3,495,388	+	nirC	b3367	0.45	-0.2
3,495,388	+	nirC	b3367	0.45	+0.2
3,495,388	+	nirC	b3367	0.45	-0.7
3,495,396	-	nirC	b3367	0.46	-0.1
3,495,491	+	nirC	b3367	0.58	-0.0
3,495,535	+	nirC	b3367	0.63	-0.5
3,495,579	-	nirC	b3367	0.69	-0.6
3,495,609	+	nirC	b3367	0.72	+0.6
3,495,623	-	nirC	b3367	0.74	+0.8
3,495,623	-	nirC	b3367	0.74	+0.6
3,495,626	+	nirC	b3367	0.74	-1.0
3,495,626	+	nirC	b3367	0.74	-0.7
3,495,645	+	nirC	b3367	0.77	-0.3
3,495,645	+	nirC	b3367	0.77	+0.4
3,495,653	+	nirC	b3367	0.78	+0.2
3,495,654	-	nirC	b3367	0.78	-0.2
3,495,678	-	nirC	b3367	0.81	+1.1
3,495,678	-	nirC	b3367	0.81	+0.3
3,495,702	+	nirC	b3367	0.84	+0.5
3,495,705	-	nirC	b3367	0.84	+0.9
3,495,710	-	nirC	b3367	0.85	+0.4
3,495,715	-	nirC	b3367	0.86	-0.3
3,495,717	+	nirC	b3367	0.86	+0.4
3,495,744	-	nirC	b3367	0.89	-0.3
3,495,832	-				-0.3
3,495,893	+				-3.5
3,495,932	-				-1.9
3,495,936	+				-1.3
3,495,983	+				-2.4
3,495,993	+	cysG	b3368	0.10	-2.6
3,496,019	+	cysG	b3368	0.12	-2.6
3,496,019	+	cysG	b3368	0.12	-4.4
3,496,019	+	cysG	b3368	0.12	-2.8
3,496,026	-	cysG	b3368	0.13	-2.3
3,496,065	-	cysG	b3368	0.16	-4.0
3,496,070	-	cysG	b3368	0.16	-2.4
3,496,100	+	cysG	b3368	0.18	-2.5
3,496,100	+	cysG	b3368	0.18	-0.7
3,496,119	-	cysG	b3368	0.20	-2.9
3,496,119	-	cysG	b3368	0.20	-3.3
3,496,237	-	cysG	b3368	0.28	-2.5
3,496,300	-	cysG	b3368	0.33	-4.2
3,496,300	-	cysG	b3368	0.33	-2.8
3,496,345	+	cysG	b3368	0.36	-4.0
3,496,351	+	cysG	b3368	0.36	-3.0
3,496,371	-	cysG	b3368	0.38	-0.8
3,496,417	-	cysG	b3368	0.41	-2.7
3,496,422	-	cysG	b3368	0.42	-2.6
3,496,456	-	cysG	b3368	0.44	-1.5
3,496,502	-	cysG	b3368	0.47	-1.9
3,496,504	+	cysG	b3368	0.48	-2.4
3,496,504	+	cysG	b3368	0.48	-2.4
3,496,514	+	cysG	b3368	0.48	-2.6
3,496,514	+	cysG	b3368	0.48	-2.2
3,496,514	+	cysG	b3368	0.48	-1.8
3,496,519	-	cysG	b3368	0.49	-5.0
3,496,529	+	cysG	b3368	0.49	-3.1
3,496,529	+	cysG	b3368	0.49	-3.7
3,496,539	+	cysG	b3368	0.50	-2.1
3,496,539	+	cysG	b3368	0.50	-3.8
3,496,582	-	cysG	b3368	0.53	-2.0
3,496,582	-	cysG	b3368	0.53	-0.9
3,496,582	-	cysG	b3368	0.53	-1.0
3,496,585	+	cysG	b3368	0.53	-2.1
3,496,585	+	cysG	b3368	0.53	-3.5
3,496,585	+	cysG	b3368	0.53	-3.8
3,496,585	-	cysG	b3368	0.53	-2.4
3,496,617	-	cysG	b3368	0.56	-3.0
3,496,622	-	cysG	b3368	0.56	-2.4
3,496,634	+	cysG	b3368	0.57	-4.1
3,496,666	+	cysG	b3368	0.59	-2.0
3,496,666	+	cysG	b3368	0.59	-2.1
3,496,675	+	cysG	b3368	0.60	-3.1
3,496,675	+	cysG	b3368	0.60	-2.1
3,496,679	-	cysG	b3368	0.60	-3.8
3,496,679	-	cysG	b3368	0.60	-4.7
3,496,682	-	cysG	b3368	0.61	-1.2
3,496,697	+	cysG	b3368	0.62	-4.3
3,496,697	+	cysG	b3368	0.62	-1.3
3,496,702	+	cysG	b3368	0.62	-2.8
3,496,702	+	cysG	b3368	0.62	-2.9
3,496,708	-	cysG	b3368	0.62	-2.2
3,496,786	+	cysG	b3368	0.68	-3.7
3,496,794	-	cysG	b3368	0.69	-1.7
3,496,797	+	cysG	b3368	0.69	-1.7
3,496,800	+	cysG	b3368	0.69	-2.5
3,496,800	+	cysG	b3368	0.69	-2.1
3,496,800	+	cysG	b3368	0.69	-3.7
3,496,823	+	cysG	b3368	0.71	-1.6
3,496,823	+	cysG	b3368	0.71	-2.6
3,496,825	+	cysG	b3368	0.71	-3.9