Strain Fitness in Escherichia coli BW25113 around b4384

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,617,961	-	deoB	b4383	0.27	-4.3
4,618,009	+	deoB	b4383	0.31	-5.1
4,618,009	+	deoB	b4383	0.31	-1.7
4,618,012	+	deoB	b4383	0.32	-4.2
4,618,012	+	deoB	b4383	0.32	-2.6
4,618,030	+	deoB	b4383	0.33	-2.7
4,618,030	+	deoB	b4383	0.33	-3.4
4,618,076	+	deoB	b4383	0.37	-3.5
4,618,088	+	deoB	b4383	0.38	-3.4
4,618,285	+	deoB	b4383	0.54	-4.4
4,618,335	+	deoB	b4383	0.58	-2.1
4,618,411	+				+0.6
4,618,411	+	deoB	b4383	0.64	-3.4
4,618,411	+	deoB	b4383	0.64	-4.4
4,618,411	+	deoB	b4383	0.64	-3.1
4,618,512	-	deoB	b4383	0.72	-3.6
4,618,512	-	deoB	b4383	0.72	-4.1
4,618,528	+	deoB	b4383	0.74	-3.0
4,618,553	-	deoB	b4383	0.76	-3.4
4,618,587	+	deoB	b4383	0.79	-4.1
4,618,587	+	deoB	b4383	0.79	-2.0
4,618,641	-	deoB	b4383	0.83	-4.8
4,618,646	+	deoB	b4383	0.83	-4.7
4,618,646	+	deoB	b4383	0.83	-4.3
4,618,681	+	deoB	b4383	0.86	-2.7
4,618,681	+	deoB	b4383	0.86	-1.2
4,618,687	+	deoB	b4383	0.87	-4.4
4,618,689	-	deoB	b4383	0.87	-1.9
4,618,714	+	deoB	b4383	0.89	-4.4
4,618,718	-	deoB	b4383	0.89	-3.9
4,618,718	-	deoB	b4383	0.89	-3.6
4,618,732	-				-4.2
4,618,851	-				-2.4
4,618,864	+				+0.1
4,618,872	-				-2.9
4,618,977	-				-1.3
4,618,991	-	deoD	b4384	0.12	-0.2
4,619,050	-	deoD	b4384	0.20	-0.4
4,619,050	-	deoD	b4384	0.20	-1.2
4,619,089	+	deoD	b4384	0.25	-1.4
4,619,094	+	deoD	b4384	0.26	-1.0
4,619,094	+	deoD	b4384	0.26	-0.6
4,619,104	+	deoD	b4384	0.28	-0.1
4,619,104	+	deoD	b4384	0.28	-0.1
4,619,109	+	deoD	b4384	0.28	+0.2
4,619,117	-	deoD	b4384	0.29	-0.5
4,619,119	+	deoD	b4384	0.30	-1.6
4,619,119	+	deoD	b4384	0.30	-0.4
4,619,128	+	deoD	b4384	0.31	+0.0
4,619,131	+	deoD	b4384	0.31	-0.1
4,619,198	+	deoD	b4384	0.41	-1.0
4,619,223	+	deoD	b4384	0.44	-1.3
4,619,272	+	deoD	b4384	0.51	-0.1
4,619,279	+	deoD	b4384	0.52	-1.6
4,619,298	+	deoD	b4384	0.54	+0.1
4,619,298	+	deoD	b4384	0.54	-1.4
4,619,316	-	deoD	b4384	0.57	-0.8
4,619,335	+	deoD	b4384	0.60	-0.9
4,619,335	+	deoD	b4384	0.60	-2.0
4,619,336	-	deoD	b4384	0.60	-1.3
4,619,340	+	deoD	b4384	0.60	-0.6
4,619,355	+	deoD	b4384	0.62	-0.8
4,619,375	-	deoD	b4384	0.65	-1.3
4,619,375	-	deoD	b4384	0.65	-1.2
4,619,382	+	deoD	b4384	0.66	-0.4
4,619,382	+	deoD	b4384	0.66	+0.4
4,619,385	-	deoD	b4384	0.67	-0.8
4,619,385	-	deoD	b4384	0.67	-1.0
4,619,390	-	deoD	b4384	0.67	-0.9
4,619,390	-	deoD	b4384	0.67	-1.1
4,619,512	+	deoD	b4384	0.84	-1.6
4,619,513	+	deoD	b4384	0.84	-0.4
4,619,513	+	deoD	b4384	0.84	-1.4
4,619,513	+	deoD	b4384	0.84	-0.9
4,619,541	+	deoD	b4384	0.88	-0.5
4,619,564	-				-0.8
4,619,564	-				-0.6
4,619,593	+				-0.9
4,619,899	+				+0.2
4,619,899	+				+0.3
4,619,929	+	yjjJ	b4385	0.10	-0.4
4,619,942	+	yjjJ	b4385	0.11	+0.1
4,619,947	+	yjjJ	b4385	0.12	+0.2
4,619,947	+	yjjJ	b4385	0.12	-0.1
4,619,964	+	yjjJ	b4385	0.13	+0.2
4,619,972	-	yjjJ	b4385	0.14	-1.0
4,620,029	+	yjjJ	b4385	0.18	+0.5
4,620,114	-	yjjJ	b4385	0.24	-0.8
4,620,193	-	yjjJ	b4385	0.30	-0.6
4,620,217	+	yjjJ	b4385	0.32	+0.8
4,620,305	-	yjjJ	b4385	0.39	+0.6
4,620,335	-	yjjJ	b4385	0.41	-0.4
4,620,350	-	yjjJ	b4385	0.42	-0.4
4,620,350	-	yjjJ	b4385	0.42	-0.1
4,620,455	-	yjjJ	b4385	0.50	-0.7
4,620,484	-	yjjJ	b4385	0.52	+0.6
4,620,581	-	yjjJ	b4385	0.59	+0.0
4,620,583	+	yjjJ	b4385	0.59	+0.3
4,620,608	-	yjjJ	b4385	0.61	-1.4