Strain Fitness in Escherichia coli BW25113 around b4018

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
4,219,879	+	arpA	b4017	0.71	+2.7
4,219,892	+	arpA	b4017	0.72	+2.7
4,219,892	+	arpA	b4017	0.72	+2.7
4,219,895	+	arpA	b4017	0.72	+0.1
4,219,900	-	arpA	b4017	0.72	+2.7
4,219,902	+	arpA	b4017	0.72	+2.7
4,219,995	+	arpA	b4017	0.76	+4.3
4,220,048	+	arpA	b4017	0.79	+2.7
4,220,050	+	arpA	b4017	0.79	+2.7
4,220,050	+	arpA	b4017	0.79	+0.7
4,220,051	+	arpA	b4017	0.79	+2.7
4,220,058	+	arpA	b4017	0.79	+1.1
4,220,058	+	arpA	b4017	0.79	+2.7
4,220,603	-				-2.0
4,220,630	-				+1.4
4,220,728	-				-0.8
4,220,730	-				-0.4
4,220,730	-				-1.7
4,220,759	-				-0.4
4,220,783	-				-0.1
4,220,815	-				+0.0
4,220,815	-				-1.8
4,220,840	-				-0.5
4,220,858	-				+0.5
4,220,872	+				-0.5
4,220,883	+				+1.3
4,220,907	+				+1.3
4,220,960	-	iclR	b4018	0.16	-0.8
4,220,969	+	iclR	b4018	0.17	-0.8
4,220,971	+	iclR	b4018	0.17	-0.3
4,220,992	-	iclR	b4018	0.20	-2.0
4,220,992	-	iclR	b4018	0.20	-0.3
4,220,994	+	iclR	b4018	0.20	-0.1
4,220,997	+	iclR	b4018	0.21	-0.2
4,221,000	+	iclR	b4018	0.21	-1.8
4,221,001	-	iclR	b4018	0.21	-2.5
4,221,013	-	iclR	b4018	0.23	-1.1
4,221,064	+	iclR	b4018	0.29	-0.5
4,221,089	-	iclR	b4018	0.32	-1.0
4,221,094	-	iclR	b4018	0.32	-1.4
4,221,094	-	iclR	b4018	0.32	-1.8
4,221,099	-	iclR	b4018	0.33	-1.6
4,221,100	+	iclR	b4018	0.33	+0.7
4,221,100	+	iclR	b4018	0.33	+0.1
4,221,100	-	iclR	b4018	0.33	-2.1
4,221,127	+	iclR	b4018	0.36	-0.7
4,221,140	-	iclR	b4018	0.38	-3.9
4,221,140	-	iclR	b4018	0.38	-1.8
4,221,186	-	iclR	b4018	0.44	-0.7
4,221,227	+	iclR	b4018	0.48	-2.2
4,221,227	+	iclR	b4018	0.48	+0.1
4,221,232	+	iclR	b4018	0.49	-3.5
4,221,234	+	iclR	b4018	0.49	-2.4
4,221,234	+	iclR	b4018	0.49	+1.1
4,221,235	-	iclR	b4018	0.49	-0.8
4,221,235	-	iclR	b4018	0.49	-0.6
4,221,277	-	iclR	b4018	0.55	-2.5
4,221,277	-	iclR	b4018	0.55	-1.9
4,221,320	-	iclR	b4018	0.60	-1.5
4,221,330	-	iclR	b4018	0.61	-2.6
4,221,335	-	iclR	b4018	0.62	-0.8
4,221,452	+	iclR	b4018	0.76	+0.1
4,221,524	-	iclR	b4018	0.84	-2.1
4,221,585	+				-1.0
4,221,861	+				-0.3
4,221,920	-				-0.0
4,221,922	-				-0.6
4,221,936	+				+0.9
4,221,936	+				-2.3
4,222,014	+				-0.5
4,222,049	+				-0.5
4,222,057	-				+0.4
4,222,068	-				+0.1
4,222,196	+				+0.4
4,222,198	+				-0.1
4,222,215	+				-0.5
4,222,215	+				-0.2
4,222,215	+				-0.3
4,222,270	+	metH	b4019	0.11	-0.9
4,222,335	+	metH	b4019	0.13	-0.1
4,222,335	+	metH	b4019	0.13	-0.8
4,222,389	-	metH	b4019	0.15	-1.0
4,222,447	+	metH	b4019	0.16	+0.6
4,222,455	-	metH	b4019	0.16	+1.1
4,222,455	-	metH	b4019	0.16	-0.4
4,222,468	-	metH	b4019	0.17	-1.1
4,222,519	+	metH	b4019	0.18	-0.7
4,222,549	-	metH	b4019	0.19	-0.2
4,222,630	-	metH	b4019	0.21	-1.0