Strain Fitness in Escherichia coli BW25113 around b3539

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,697,607	+	bcsG	b3538	0.82	+0.2
3,697,607	+	bcsG	b3538	0.82	-0.1
3,697,615	+	bcsG	b3538	0.82	+0.3
3,697,615	+	bcsG	b3538	0.82	-0.4
3,697,677	+	bcsG	b3538	0.86	-0.4
3,697,736	+	bcsG	b3538	0.89	+0.1
3,697,861	+				+0.3
3,697,886	-				-1.5
3,697,886	-				-1.0
3,697,945	+				-0.4
3,697,945	+				-0.4
3,698,018	+	ldrD	b4453	0.14	+0.5
3,698,052	+	ldrD	b4453	0.45	+0.4
3,698,055	-	ldrD	b4453	0.48	+0.2
3,698,103	-				-0.6
3,698,103	-				-0.0
3,698,107	+				+0.8
3,698,158	+				-0.9
3,698,158	+				+0.4
3,698,158	+				-0.7
3,698,158	+				-0.1
3,698,165	+				+0.1
3,698,165	+				-0.1
3,698,166	-	rdlD	b4454	0.11	-0.5
3,698,178	-	rdlD	b4454	0.29	+0.3
3,698,185	+	rdlD	b4454	0.39	-0.0
3,698,190	+	rdlD	b4454	0.47	-0.3
3,698,195	+	rdlD	b4454	0.55	-0.5
3,698,195	+	rdlD	b4454	0.55	+0.3
3,698,195	+	rdlD	b4454	0.55	-0.6
3,698,195	+	rdlD	b4454	0.55	-1.1
3,698,257	-				-0.4
3,698,260	+				+0.4
3,698,277	+				+0.4
3,698,318	+				-1.9
3,698,333	+				+0.3
3,698,333	+				-1.8
3,698,340	+				-0.3
3,698,407	-				-0.6
3,698,410	+				+0.3
3,698,410	+				-0.0
3,698,410	+				+0.0
3,698,410	+				-0.3
3,698,411	+				+0.4
3,698,418	-				+0.0
3,698,418	-				-2.0
3,698,418	-				+0.1
3,698,429	-				+0.6
3,698,429	-				+1.1
3,698,429	-				+0.7
3,698,452	+				+0.3
3,698,452	-				-2.2
3,698,473	+				+0.2
3,698,474	-				+0.2
3,698,474	-				+0.4
3,698,487	+				-0.1
3,698,487	+				-0.5
3,698,501	+				+0.2
3,698,501	+				+0.2
3,698,503	+				-0.3
3,698,503	+				+0.2
3,698,507	-				+0.1
3,698,519	-				+0.1
3,698,533	-				-0.2
3,698,533	-				-0.8
3,698,533	-				+0.2
3,698,589	-				-0.1
3,698,591	+				-0.9
3,698,591	+				+0.9
3,698,593	+				-0.2
3,698,607	-				-0.1
3,698,612	-				-0.5
3,698,632	+				-0.3
3,698,632	+				+0.9
3,698,634	+				-0.5
3,698,640	+				-0.1
3,698,642	-				+0.2
3,698,660	+				+0.2
3,698,660	+				+0.2
3,698,667	+				-0.2
3,698,681	+				+0.2
3,698,681	+				-0.2
3,698,683	+				-1.1
3,698,683	+				-0.6
3,698,689	+				-0.1
3,698,690	-				-0.2
3,698,691	+				-1.1
3,698,691	+				+0.5
3,698,693	+				-0.2
3,698,694	-				+0.2
3,698,696	-				+0.9
3,698,696	-				-0.6
3,698,699	-				+0.5
3,698,699	-				+0.5
3,698,699	-				-0.3
3,698,701	-				+0.4
3,698,715	-	yhjV	b3539	0.10	-1.4
3,698,755	-	yhjV	b3539	0.13	-0.1
3,698,760	+	yhjV	b3539	0.14	+0.4
3,698,760	-	yhjV	b3539	0.14	-0.1
3,698,760	-	yhjV	b3539	0.14	+0.6
3,698,761	-	yhjV	b3539	0.14	+0.1
3,698,761	-	yhjV	b3539	0.14	+0.7
3,698,765	+	yhjV	b3539	0.14	-0.8
3,698,765	+	yhjV	b3539	0.14	+0.1
3,698,765	+	yhjV	b3539	0.14	+0.4
3,698,765	+	yhjV	b3539	0.14	+0.8
3,698,765	+	yhjV	b3539	0.14	+0.6
3,698,773	-	yhjV	b3539	0.15	-0.1
3,698,773	-	yhjV	b3539	0.15	-0.6
3,698,773	-	yhjV	b3539	0.15	+0.7
3,698,773	-	yhjV	b3539	0.15	+0.6
3,698,775	+	yhjV	b3539	0.15	+0.3
3,698,783	+	yhjV	b3539	0.15	-0.3
3,698,783	-	yhjV	b3539	0.15	-1.4
3,698,783	-	yhjV	b3539	0.15	+0.6
3,698,783	-	yhjV	b3539	0.15	-0.4
3,698,822	+	yhjV	b3539	0.19	-0.1
3,698,847	+	yhjV	b3539	0.21	+0.2
3,698,850	-	yhjV	b3539	0.21	+0.2
3,698,850	-	yhjV	b3539	0.21	+0.3
3,698,856	-	yhjV	b3539	0.21	-0.2
3,698,909	-	yhjV	b3539	0.25	-0.6
3,698,909	-	yhjV	b3539	0.25	+0.8
3,698,920	+	yhjV	b3539	0.26	-0.9
3,698,925	+	yhjV	b3539	0.27	-0.9
3,698,925	+	yhjV	b3539	0.27	+0.0
3,699,046	+	yhjV	b3539	0.36	-1.1
3,699,046	+	yhjV	b3539	0.36	+0.0
3,699,054	-	yhjV	b3539	0.37	-0.3
3,699,102	-	yhjV	b3539	0.41	-0.5
3,699,102	-	yhjV	b3539	0.41	-0.4
3,699,102	-	yhjV	b3539	0.41	+0.1
3,699,126	-	yhjV	b3539	0.42	+2.7
3,699,145	-	yhjV	b3539	0.44	-0.6
3,699,160	+	yhjV	b3539	0.45	+0.1
3,699,160	+	yhjV	b3539	0.45	-0.7
3,699,171	-	yhjV	b3539	0.46	+0.7
3,699,192	+	yhjV	b3539	0.48	+0.3
3,699,198	-	yhjV	b3539	0.48	-1.7
3,699,200	-	yhjV	b3539	0.48	-0.6
3,699,200	-	yhjV	b3539	0.48	+0.5
3,699,203	-	yhjV	b3539	0.49	+0.9
3,699,203	-	yhjV	b3539	0.49	+0.9
3,699,228	+	yhjV	b3539	0.50	-1.4
3,699,228	+	yhjV	b3539	0.50	+0.6
3,699,254	+	yhjV	b3539	0.53	+0.4
3,699,255	-	yhjV	b3539	0.53	-0.4
3,699,255	-	yhjV	b3539	0.53	+0.3
3,699,259	-	yhjV	b3539	0.53	+0.0
3,699,259	-	yhjV	b3539	0.53	-1.6
3,699,273	-	yhjV	b3539	0.54	-0.3
3,699,287	+	yhjV	b3539	0.55	-0.6
3,699,287	+	yhjV	b3539	0.55	+0.7
3,699,294	-	yhjV	b3539	0.56	+0.3
3,699,294	-	yhjV	b3539	0.56	+0.5
3,699,296	-	yhjV	b3539	0.56	+0.5
3,699,300	-	yhjV	b3539	0.56	-0.1
3,699,305	-				+0.9
3,699,305	-	yhjV	b3539	0.57	+0.8
3,699,305	-	yhjV	b3539	0.57	+0.0
3,699,311	+	yhjV	b3539	0.57	-1.5
3,699,313	+	yhjV	b3539	0.57	+0.3
3,699,316	-	yhjV	b3539	0.57	-0.1
3,699,317	-	yhjV	b3539	0.57	+0.9
3,699,317	-	yhjV	b3539	0.57	+0.6
3,699,330	-	yhjV	b3539	0.58	+2.0
3,699,330	-	yhjV	b3539	0.58	+0.8
3,699,336	-	yhjV	b3539	0.59	+0.1
3,699,341	+	yhjV	b3539	0.59	+0.5
3,699,352	+	yhjV	b3539	0.60	-0.3
3,699,390	-	yhjV	b3539	0.63	+0.4
3,699,390	-	yhjV	b3539	0.63	+1.2
3,699,396	-	yhjV	b3539	0.64	+0.6
3,699,396	-	yhjV	b3539	0.64	-0.0
3,699,410	-	yhjV	b3539	0.65	+0.6
3,699,424	+	yhjV	b3539	0.66	-0.0
3,699,424	+	yhjV	b3539	0.66	-0.2
3,699,432	-	yhjV	b3539	0.67	-1.1
3,699,436	+	yhjV	b3539	0.67	+0.4
3,699,437	-	yhjV	b3539	0.67	+0.4
3,699,447	+	yhjV	b3539	0.68	-0.2
3,699,447	+	yhjV	b3539	0.68	-0.0
3,699,449	+	yhjV	b3539	0.68	+0.2
3,699,462	+	yhjV	b3539	0.69	+0.2
3,699,468	+	yhjV	b3539	0.69	+0.1
3,699,468	+	yhjV	b3539	0.69	+0.6
3,699,476	-	yhjV	b3539	0.70	+0.9
3,699,476	-	yhjV	b3539	0.70	+0.9
3,699,478	+	yhjV	b3539	0.70	-0.4
3,699,478	+	yhjV	b3539	0.70	-0.2
3,699,486	-	yhjV	b3539	0.71	-0.0
3,699,486	-	yhjV	b3539	0.71	-1.0
3,699,486	-	yhjV	b3539	0.71	+0.0
3,699,498	-	yhjV	b3539	0.72	+0.4
3,699,499	+	yhjV	b3539	0.72	+0.4
3,699,507	-	yhjV	b3539	0.72	-0.4
3,699,545	-	yhjV	b3539	0.75	-0.3
3,699,546	+	yhjV	b3539	0.75	-0.3
3,699,582	+	yhjV	b3539	0.78	+0.2
3,699,612	-	yhjV	b3539	0.81	+0.8
3,699,618	+	yhjV	b3539	0.81	+0.3
3,699,619	+	yhjV	b3539	0.81	-0.6
3,699,628	+	yhjV	b3539	0.82	-0.2
3,699,661	+	yhjV	b3539	0.85	+0.2
3,699,673	+	yhjV	b3539	0.85	+0.5
3,699,673	+	yhjV	b3539	0.85	-0.0
3,699,673	+	yhjV	b3539	0.85	-0.2
3,699,681	+	yhjV	b3539	0.86	+1.0
3,699,681	+	yhjV	b3539	0.86	-0.2
3,699,684	-	yhjV	b3539	0.86	+0.6
3,699,713	+	yhjV	b3539	0.89	+0.2
3,699,713	+	yhjV	b3539	0.89	-0.1
3,699,716	-	yhjV	b3539	0.89	+0.4
3,699,716	-	yhjV	b3539	0.89	+0.6
3,699,717	+	yhjV	b3539	0.89	+0.2
3,699,718	+	yhjV	b3539	0.89	-0.4
3,699,721	-	yhjV	b3539	0.89	-0.2
3,699,721	-	yhjV	b3539	0.89	+0.9
3,699,721	-	yhjV	b3539	0.89	-0.3
3,699,726	-	yhjV	b3539	0.90	-0.3
3,699,726	-	yhjV	b3539	0.90	-1.1
3,699,733	-				+0.4
3,699,829	+				-0.7
3,699,837	-				-0.2
3,699,860	-				-0.1
3,699,893	-				+0.3
3,699,947	+				-0.4
3,700,024	-	dppF	b3540	0.14	-0.4
3,700,035	+	dppF	b3540	0.15	+0.6
3,700,101	+	dppF	b3540	0.21	+0.6
3,700,127	-	dppF	b3540	0.24	+0.0
3,700,187	+	dppF	b3540	0.30	-1.9
3,700,190	+	dppF	b3540	0.30	-0.4
3,700,192	-	dppF	b3540	0.30	+0.3
3,700,192	-	dppF	b3540	0.30	-0.2
3,700,226	-	dppF	b3540	0.34	-1.9
3,700,253	-	dppF	b3540	0.36	+1.0
3,700,253	-	dppF	b3540	0.36	-0.6
3,700,287	+	dppF	b3540	0.40	-0.7
3,700,287	+	dppF	b3540	0.40	-0.5
3,700,292	-	dppF	b3540	0.40	-0.3
3,700,386	+	dppF	b3540	0.50	-0.3
3,700,386	+	dppF	b3540	0.50	-0.2
3,700,394	-	dppF	b3540	0.50	-0.4
3,700,409	-	dppF	b3540	0.52	-0.4
3,700,506	+	dppF	b3540	0.62	-0.9
3,700,606	+	dppF	b3540	0.72	+0.0
3,700,614	-	dppF	b3540	0.72	+0.3
3,700,634	-	dppF	b3540	0.74	-0.3
3,700,640	-	dppF	b3540	0.75	-0.2
3,700,647	+	dppF	b3540	0.76	+0.1
3,700,647	+	dppF	b3540	0.76	+0.2
3,700,647	+	dppF	b3540	0.76	+0.5
3,700,655	-	dppF	b3540	0.76	+0.7
3,700,657	-	dppF	b3540	0.77	-0.1
3,700,727	+	dppF	b3540	0.84	+0.0
3,700,732	+	dppF	b3540	0.84	+0.2
3,700,739	-	dppF	b3540	0.85	+0.0
3,700,761	-	dppF	b3540	0.87	-1.2
3,700,761	-	dppF	b3540	0.87	+0.1