Strain Fitness in Escherichia coli BW25113 around b2796

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,925,287	+	ygdH	b2795	0.70	-0.2
2,925,302	-	ygdH	b2795	0.71	-0.8
2,925,302	-	ygdH	b2795	0.71	-0.2
2,925,302	-	ygdH	b2795	0.71	-0.8
2,925,302	-	ygdH	b2795	0.71	-2.2
2,925,431	-	ygdH	b2795	0.81	+0.2
2,925,453	-	ygdH	b2795	0.82	-0.6
2,925,483	+	ygdH	b2795	0.84	-0.7
2,925,483	+	ygdH	b2795	0.84	-0.3
2,925,488	+	ygdH	b2795	0.85	-0.2
2,925,503	-	ygdH	b2795	0.86	-0.7
2,925,662	+				-0.7
2,925,670	-				-0.8
2,925,780	+				-1.5
2,925,793	-				+0.4
2,925,807	-				-0.2
2,925,807	-				-0.0
2,925,951	-				-0.2
2,926,089	+				+0.7
2,926,089	+				+0.3
2,926,096	+				-0.8
2,926,104	-				+0.0
2,926,268	+				+0.2
2,926,268	+				-0.0
2,926,299	-				+0.0
2,926,299	-				+0.2
2,926,312	-				+0.4
2,926,312	-				+0.0
2,926,318	-				-0.2
2,926,350	-				-0.1
2,926,375	-				-0.2
2,926,375	-				+0.5
2,926,387	+	sdaC	b2796	0.11	+0.2
2,926,396	+	sdaC	b2796	0.11	-0.0
2,926,396	+	sdaC	b2796	0.11	+0.3
2,926,401	-	sdaC	b2796	0.12	+0.6
2,926,458	+	sdaC	b2796	0.16	+0.1
2,926,458	+	sdaC	b2796	0.16	+0.4
2,926,519	-	sdaC	b2796	0.21	+0.2
2,926,519	-	sdaC	b2796	0.21	+0.2
2,926,559	+	sdaC	b2796	0.24	-1.1
2,926,583	-	sdaC	b2796	0.26	+0.3
2,926,583	-	sdaC	b2796	0.26	-0.0
2,926,634	-	sdaC	b2796	0.30	-0.1
2,926,634	-	sdaC	b2796	0.30	+1.4
2,926,646	+	sdaC	b2796	0.31	-0.3
2,926,646	+	sdaC	b2796	0.31	+0.0
2,926,704	-	sdaC	b2796	0.35	-0.0
2,926,704	-	sdaC	b2796	0.35	+0.7
2,926,730	-	sdaC	b2796	0.37	-0.1
2,926,732	+	sdaC	b2796	0.37	+0.7
2,926,732	+	sdaC	b2796	0.37	+0.4
2,926,745	+	sdaC	b2796	0.38	+0.5
2,926,789	+	sdaC	b2796	0.42	+0.1
2,926,789	+	sdaC	b2796	0.42	+0.4
2,926,801	-	sdaC	b2796	0.43	+0.4
2,926,819	-	sdaC	b2796	0.44	+0.4
2,926,844	-	sdaC	b2796	0.46	-0.0
2,926,844	-	sdaC	b2796	0.46	+0.5
2,926,844	-	sdaC	b2796	0.46	+0.7
2,926,875	-	sdaC	b2796	0.48	-0.5
2,926,875	-	sdaC	b2796	0.48	+0.1
2,926,886	-	sdaC	b2796	0.49	+0.9
2,926,886	-	sdaC	b2796	0.49	+0.1
2,926,886	-	sdaC	b2796	0.49	+0.4
2,926,886	-	sdaC	b2796	0.49	-0.0
2,926,887	-	sdaC	b2796	0.49	+0.3
2,926,955	-	sdaC	b2796	0.55	-0.5
2,926,955	-	sdaC	b2796	0.55	+1.3
2,926,962	+	sdaC	b2796	0.55	+0.2
2,926,980	+	sdaC	b2796	0.57	+0.1
2,926,980	+	sdaC	b2796	0.57	-0.5
2,927,023	-	sdaC	b2796	0.60	+0.8
2,927,053	+	sdaC	b2796	0.62	+0.2
2,927,054	-	sdaC	b2796	0.62	+0.4
2,927,056	+	sdaC	b2796	0.62	+0.5
2,927,058	+	sdaC	b2796	0.63	+0.3
2,927,058	+	sdaC	b2796	0.63	+0.1
2,927,117	+	sdaC	b2796	0.67	-0.8
2,927,117	+	sdaC	b2796	0.67	-0.2
2,927,160	-	sdaC	b2796	0.70	+0.8
2,927,229	-	sdaC	b2796	0.76	-0.0
2,927,229	-	sdaC	b2796	0.76	-0.2
2,927,231	-	sdaC	b2796	0.76	-0.1
2,927,231	-	sdaC	b2796	0.76	-0.6
2,927,256	+	sdaC	b2796	0.78	+0.1
2,927,297	+	sdaC	b2796	0.81	+0.2
2,927,312	+	sdaC	b2796	0.82	-0.1
2,927,312	+	sdaC	b2796	0.82	+0.1
2,927,312	+	sdaC	b2796	0.82	+0.3
2,927,318	+	sdaC	b2796	0.83	+0.0
2,927,318	+	sdaC	b2796	0.83	-0.9
2,927,321	+	sdaC	b2796	0.83	+0.1
2,927,327	+	sdaC	b2796	0.83	-0.2
2,927,327	+	sdaC	b2796	0.83	+1.1
2,927,340	-	sdaC	b2796	0.84	-1.0
2,927,340	-	sdaC	b2796	0.84	+1.0
2,927,367	-	sdaC	b2796	0.87	+1.0
2,927,376	+	sdaC	b2796	0.87	+0.4
2,927,384	-	sdaC	b2796	0.88	-0.2
2,927,403	+	sdaC	b2796	0.89	-0.3
2,927,456	+				-0.1
2,927,464	-				+0.3
2,927,468	+				-0.1
2,927,468	+				-1.9
2,927,468	+				-0.7
2,927,476	+				-0.2
2,927,534	+				-0.5
2,927,534	+				-0.1
2,927,534	-				-0.1
2,927,679	+				+0.3
2,927,733	+				+0.8
2,927,742	-	sdaB	b2797	0.11	+1.5
2,927,764	-	sdaB	b2797	0.12	+0.3
2,927,776	+	sdaB	b2797	0.13	+0.0
2,927,780	+	sdaB	b2797	0.13	+0.4
2,927,780	+	sdaB	b2797	0.13	+0.1
2,927,802	+	sdaB	b2797	0.15	+0.0
2,927,827	-	sdaB	b2797	0.17	-0.6
2,927,893	+	sdaB	b2797	0.22	-0.3
2,927,953	+	sdaB	b2797	0.26	-0.1
2,927,978	+	sdaB	b2797	0.28	+0.5
2,927,978	+	sdaB	b2797	0.28	+0.9
2,927,978	+	sdaB	b2797	0.28	+0.0
2,927,978	+	sdaB	b2797	0.28	-0.4
2,927,981	-	sdaB	b2797	0.28	+0.1
2,927,981	-	sdaB	b2797	0.28	-0.1
2,928,085	-	sdaB	b2797	0.36	+0.8
2,928,085	-	sdaB	b2797	0.36	+0.2
2,928,147	-	sdaB	b2797	0.40	-0.6
2,928,147	-	sdaB	b2797	0.40	+0.0
2,928,210	+	sdaB	b2797	0.45	+0.6
2,928,261	-	sdaB	b2797	0.48	+0.1
2,928,261	-	sdaB	b2797	0.48	-0.5
2,928,312	-	sdaB	b2797	0.52	-0.3
2,928,313	+	sdaB	b2797	0.52	+0.3
2,928,313	+	sdaB	b2797	0.52	-0.2
2,928,313	+	sdaB	b2797	0.52	+0.6
2,928,332	-	sdaB	b2797	0.54	+0.7
2,928,410	+	sdaB	b2797	0.59	-0.0
2,928,435	+	sdaB	b2797	0.61	-0.2
2,928,445	-	sdaB	b2797	0.62	-0.2
2,928,516	+	sdaB	b2797	0.67	-0.6