Strain Fitness in Escherichia coli BW25113 around b1182

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,227,778	+	ycgM	b1180	0.72	-0.2
1,227,885	+				+0.2
1,227,885	+	ycgM	b1180	0.88	-0.4
1,227,937	+				-0.0
1,228,047	-				+0.8
1,228,060	-				-0.2
1,228,139	+	ycgN	b1181	0.22	-0.2
1,228,146	+	ycgN	b1181	0.23	+1.0
1,228,161	+	ycgN	b1181	0.27	-0.3
1,228,255	+	ycgN	b1181	0.47	-1.6
1,228,255	+	ycgN	b1181	0.47	-0.5
1,228,264	-	ycgN	b1181	0.49	+0.5
1,228,270	+	ycgN	b1181	0.50	-0.1
1,228,376	+	ycgN	b1181	0.73	+0.2
1,228,376	+	ycgN	b1181	0.73	-0.7
1,228,376	+	ycgN	b1181	0.73	-0.1
1,228,398	+	ycgN	b1181	0.78	-1.4
1,228,409	+	ycgN	b1181	0.80	-0.0
1,228,409	+	ycgN	b1181	0.80	-0.8
1,228,409	+	ycgN	b1181	0.80	+0.1
1,228,422	+	ycgN	b1181	0.83	+0.2
1,228,422	+	ycgN	b1181	0.83	-0.2
1,228,424	+	ycgN	b1181	0.84	-1.1
1,228,424	+	ycgN	b1181	0.84	+0.3
1,228,429	-	ycgN	b1181	0.85	-0.4
1,228,449	+	ycgN	b1181	0.89	-0.7
1,228,480	+				+0.0
1,228,550	+				+0.4
1,228,567	+				-0.6
1,228,584	+				-0.4
1,228,584	+				+0.5
1,228,728	-				-0.1
1,228,729	-				+1.2
1,228,769	-				+2.2
1,228,812	+	hlyE	b1182	0.12	-0.6
1,229,017	-	hlyE	b1182	0.34	+2.2
1,229,017	-	hlyE	b1182	0.34	+1.2
1,229,079	-	hlyE	b1182	0.41	-0.1
1,229,256	+	hlyE	b1182	0.60	+2.2
1,229,669	-				+2.2
1,229,703	-				+0.1
1,229,704	-				+1.0
1,229,718	-				+1.2
1,229,718	-				+0.2
1,229,838	-				+0.3
1,229,840	-				+0.8
1,229,842	-				-0.8
1,229,842	-				-0.2
1,229,844	-				-3.0
1,229,851	-				+0.1
1,229,851	-				-0.1
1,229,853	-				+0.1
1,229,859	-				-0.3
1,229,859	-				-1.1
1,229,859	-				-0.7
1,229,861	+				+3.2
1,229,897	-				+0.3
1,229,897	-				+0.2
1,230,140	+	umuD	b1183	0.36	+0.1
1,230,307	+	umuD	b1183	0.75	+0.6
1,230,446	+				-0.1