Strain Fitness in Escherichia coli BW25113 around b0430
Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Nucleobase14 rep C; time point 1 |
---|---|---|---|---|---|
remove | |||||
446,297 | - | cyoE | b0428 | 0.29 | +0.5 |
446,394 | + | cyoE | b0428 | 0.40 | -1.7 |
446,394 | + | cyoE | b0428 | 0.40 | -1.0 |
446,394 | + | cyoE | b0428 | 0.40 | -0.1 |
446,407 | - | cyoE | b0428 | 0.41 | -0.1 |
446,525 | + | cyoE | b0428 | 0.55 | -1.3 |
446,525 | + | cyoE | b0428 | 0.55 | -0.8 |
446,533 | - | cyoE | b0428 | 0.55 | +0.5 |
446,562 | - | cyoE | b0428 | 0.59 | -1.0 |
446,562 | - | cyoE | b0428 | 0.59 | -1.1 |
446,657 | + | cyoE | b0428 | 0.69 | -0.6 |
446,657 | + | cyoE | b0428 | 0.69 | -1.3 |
446,673 | - | cyoE | b0428 | 0.71 | -0.5 |
446,677 | + | cyoE | b0428 | 0.72 | +0.2 |
446,677 | + | cyoE | b0428 | 0.72 | -1.1 |
446,796 | - | cyoE | b0428 | 0.85 | +0.1 |
446,824 | + | cyoE | b0428 | 0.88 | -0.4 |
446,832 | - | cyoE | b0428 | 0.89 | -0.3 |
446,880 | + | -1.5 | |||
446,880 | + | -0.3 | |||
446,932 | + | -0.2 | |||
446,944 | + | -1.3 | |||
446,981 | - | cyoD | b0429 | 0.12 | -0.3 |
447,018 | - | cyoD | b0429 | 0.23 | -0.3 |
447,093 | - | cyoD | b0429 | 0.46 | +0.5 |
447,093 | - | cyoD | b0429 | 0.46 | -1.6 |
447,105 | - | cyoD | b0429 | 0.50 | -0.3 |
447,161 | - | cyoD | b0429 | 0.67 | +1.2 |
447,167 | + | cyoD | b0429 | 0.68 | +0.1 |
447,175 | - | cyoD | b0429 | 0.71 | -1.1 |
447,201 | + | cyoD | b0429 | 0.79 | -0.6 |
447,223 | - | cyoD | b0429 | 0.85 | +0.4 |
447,285 | - | -0.6 | |||
447,303 | - | -0.3 | |||
447,347 | + | cyoC | b0430 | 0.13 | -0.9 |
447,351 | + | cyoC | b0430 | 0.13 | -1.9 |
447,373 | - | cyoC | b0430 | 0.17 | -1.5 |
447,407 | + | cyoC | b0430 | 0.22 | -0.5 |
447,418 | - | cyoC | b0430 | 0.24 | -1.3 |
447,445 | - | cyoC | b0430 | 0.28 | +0.2 |
447,492 | + | cyoC | b0430 | 0.36 | -0.6 |
447,492 | + | cyoC | b0430 | 0.36 | -0.1 |
447,521 | + | cyoC | b0430 | 0.41 | +0.4 |
447,570 | + | cyoC | b0430 | 0.49 | -0.5 |
447,580 | + | cyoC | b0430 | 0.50 | -2.8 |
447,679 | + | cyoC | b0430 | 0.67 | -1.4 |
447,956 | + | -0.6 | |||
447,964 | - | +0.8 | |||
447,964 | - | -0.4 | |||
447,989 | + | -1.0 | |||
448,002 | - | -0.9 | |||
448,005 | + | -0.0 | |||
448,092 | - | cyoB | b0431 | 0.11 | -0.6 |
448,092 | - | cyoB | b0431 | 0.11 | +0.2 |
448,134 | - | cyoB | b0431 | 0.13 | +0.6 |
448,134 | - | cyoB | b0431 | 0.13 | -0.1 |
448,238 | - | cyoB | b0431 | 0.18 | -0.8 |
448,364 | - | cyoB | b0431 | 0.25 | +0.3 |
448,364 | - | cyoB | b0431 | 0.25 | +0.0 |
448,388 | + | cyoB | b0431 | 0.26 | -0.5 |
448,388 | + | cyoB | b0431 | 0.26 | -0.5 |
448,388 | + | cyoB | b0431 | 0.26 | -0.5 |
448,391 | - | cyoB | b0431 | 0.26 | -0.4 |
448,391 | - | cyoB | b0431 | 0.26 | -0.9 |
448,396 | - | cyoB | b0431 | 0.26 | -0.7 |
448,396 | - | cyoB | b0431 | 0.26 | +0.6 |
448,396 | - | cyoB | b0431 | 0.26 | -0.7 |
448,434 | - | cyoB | b0431 | 0.28 | -0.9 |
448,443 | - | cyoB | b0431 | 0.29 | +0.7 |
448,443 | - | cyoB | b0431 | 0.29 | +0.0 |
448,455 | - | cyoB | b0431 | 0.29 | -0.4 |
448,457 | + | cyoB | b0431 | 0.29 | -0.9 |
448,466 | + | cyoB | b0431 | 0.30 | -0.6 |
448,549 | + | cyoB | b0431 | 0.34 | -0.5 |
448,557 | - | cyoB | b0431 | 0.34 | -1.1 |
448,641 | - | cyoB | b0431 | 0.39 | -1.1 |
448,678 | + | cyoB | b0431 | 0.40 | -0.3 |
448,722 | + | cyoB | b0431 | 0.43 | -0.4 |
448,722 | - | cyoB | b0431 | 0.43 | +1.3 |
448,730 | - | cyoB | b0431 | 0.43 | -1.2 |
448,750 | - | cyoB | b0431 | 0.44 | -1.2 |
448,844 | + | cyoB | b0431 | 0.49 | -1.2 |
448,844 | + | cyoB | b0431 | 0.49 | -0.7 |
448,846 | + | cyoB | b0431 | 0.49 | -1.5 |
448,854 | + | cyoB | b0431 | 0.49 | +0.1 |
448,854 | + | cyoB | b0431 | 0.49 | -0.6 |
448,854 | - | cyoB | b0431 | 0.49 | +0.4 |
448,880 | + | cyoB | b0431 | 0.51 | -0.3 |
Or see this region's nucleotide sequence