Strain Fitness in Escherichia coli BW25113 around b0080

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
87,034	-	ilvI	b0077	0.81	-0.1
87,062	-	ilvI	b0077	0.83	+0.2
87,070	+	ilvI	b0077	0.83	-0.3
87,070	+	ilvI	b0077	0.83	-0.5
87,092	-	ilvI	b0077	0.85	+0.3
87,098	-	ilvI	b0077	0.85	+0.3
87,098	-	ilvI	b0077	0.85	-0.1
87,130	+	ilvI	b0077	0.87	-1.2
87,165	-	ilvI	b0077	0.89	-0.3
87,166	-	ilvI	b0077	0.89	-0.0
87,250	+				-0.5
87,285	+				-0.2
87,443	-	ilvH	b0078	0.17	-1.5
87,480	+	ilvH	b0078	0.25	-0.1
87,497	+	ilvH	b0078	0.28	+0.4
87,571	+	ilvH	b0078	0.43	-0.4
87,571	+	ilvH	b0078	0.43	-0.7
87,588	-	ilvH	b0078	0.47	-0.3
87,617	-	ilvH	b0078	0.53	+0.1
87,617	-	ilvH	b0078	0.53	+0.6
87,640	+	ilvH	b0078	0.58	-0.7
87,665	-	ilvH	b0078	0.63	-1.2
87,698	-	ilvH	b0078	0.69	-0.3
87,705	+	ilvH	b0078	0.71	+0.0
87,710	+	ilvH	b0078	0.72	-0.6
87,710	+	ilvH	b0078	0.72	+1.0
87,718	-	ilvH	b0078	0.73	-0.3
87,718	-	ilvH	b0078	0.73	-0.4
87,718	-	ilvH	b0078	0.73	+0.0
87,718	-	ilvH	b0078	0.73	-0.3
87,740	-	ilvH	b0078	0.78	-0.2
87,744	-	ilvH	b0078	0.79	+0.2
87,785	+	ilvH	b0078	0.87	+0.0
87,802	+				-0.0
87,815	-				+0.1
87,918	-				-0.5
87,951	-				-0.3
87,955	+				-0.5
88,009	+				+0.4
88,074	+				-4.6
88,085	+				-1.5
88,111	-				-0.9
88,111	-				-1.7
88,111	-				-2.2
88,111	-				-3.1
88,113	-				-3.2
88,187	+	fruR	b0080	0.16	-2.2
88,187	+	fruR	b0080	0.16	-1.5
88,259	-	fruR	b0080	0.23	-3.3
88,265	+	fruR	b0080	0.24	-0.5
88,365	+	fruR	b0080	0.34	-1.9
88,365	+	fruR	b0080	0.34	-1.3
88,432	+	fruR	b0080	0.40	-2.2
88,432	+	fruR	b0080	0.40	-3.6
88,471	-	fruR	b0080	0.44	-1.0
88,482	+	fruR	b0080	0.45	-2.2
88,490	-	fruR	b0080	0.46	-2.5
88,492	+	fruR	b0080	0.46	-1.7
88,492	+	fruR	b0080	0.46	-1.9
88,492	+	fruR	b0080	0.46	-4.3
88,500	-	fruR	b0080	0.47	-2.2
88,517	-	fruR	b0080	0.49	-2.1
88,517	-	fruR	b0080	0.49	-3.1
88,683	+	fruR	b0080	0.65	-5.2
88,753	+	fruR	b0080	0.72	-2.8
88,772	+				+0.2
88,774	+	fruR	b0080	0.74	-3.3
88,821	+	fruR	b0080	0.79	-4.0
88,851	+	fruR	b0080	0.82	-2.9
88,851	+	fruR	b0080	0.82	-1.1
88,868	+	fruR	b0080	0.84	-2.1
88,894	+	fruR	b0080	0.86	-1.3
88,937	+				-4.6
88,945	-				-1.5
88,945	-				+0.1
88,946	+				-2.7
88,949	-				-1.3
88,992	+				-2.9
89,000	+				-3.7
89,001	-				-3.2
89,012	+				-2.1
89,015	+				-2.3
89,015	+				-2.2
89,017	+				-0.8
89,022	+				-0.1
89,023	-				+0.5
89,023	-				-3.4
89,023	-				-2.7
89,079	+				+0.3
89,079	+				-0.6
89,079	+				-0.6
89,079	+				+0.2
89,079	+				+0.5
89,079	+				+0.7
89,086	+				+0.2
89,087	-				+3.3
89,087	-				+1.6
89,087	-				+0.3
89,087	-				-0.3
89,087	-				+0.6
89,087	-				+2.0
89,089	-				+1.2
89,089	-				-2.4
89,089	-				-1.2
89,089	-				+0.2
89,091	+				-0.1
89,122	+				-0.3
89,132	+				-0.5
89,225	+				-0.3
89,294	-				+0.2
89,307	+				+0.3
89,307	+				+0.8
89,312	+				-0.6
89,312	+				-0.4
89,312	+				-0.4
89,313	-				-1.2
89,315	-				+0.4
89,325	+				-0.2
89,325	-				-0.0
89,330	-				-0.0
89,391	+				-0.4
89,393	+				-0.2
89,401	-				+0.1
89,411	+				+0.5
89,411	+				+0.4
89,416	-				+0.5
89,508	+				+1.4
89,508	+				-0.9
89,542	-				+0.2
89,542	-				-0.1
89,550	+				-1.3
89,558	-				-0.1
89,649	+				-0.1
89,649	+				+0.4
89,658	+				-0.3
89,680	+	mraZ	b0081	0.10	-0.1
89,685	+	mraZ	b0081	0.11	-0.0
89,917	+	mraZ	b0081	0.62	-1.9
89,917	+	mraZ	b0081	0.62	-0.2
89,981	+	mraZ	b0081	0.76	-0.2