Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artJ and artM are separated by 290 nucleotides artM and artQ overlap by 1 nucleotides artQ and artI are separated by 6 nucleotides artI and artP are separated by 17 nucleotides
b0860: artJ - arginine transporter subunit (NCBI), at 899,067 to 899,798
artJ
b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757
artM
b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473
artQ
b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211
artI
b0864: artP - arginine transporter subunit (NCBI), at 902,229 to 902,957
artP
Position (kb) 900
901
902 Strain fitness (log2 ratio) -2
-1
0
1 at 899.846 kb on - strand at 900.015 kb on + strand at 900.140 kb on - strand at 900.140 kb on - strand at 900.193 kb on + strand, within artM at 900.258 kb on - strand, within artM at 900.266 kb on - strand, within artM at 900.270 kb on - strand, within artM at 900.330 kb on - strand, within artM at 900.330 kb on - strand, within artM at 900.445 kb on + strand, within artM at 900.596 kb on - strand, within artM at 900.596 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.706 kb on + strand at 900.873 kb on + strand, within artQ at 901.049 kb on + strand, within artQ at 901.059 kb on + strand, within artQ at 901.088 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.555 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.850 kb on + strand, within artI at 901.850 kb on + strand, within artI at 901.858 kb on + strand, within artI at 901.858 kb on - strand, within artI at 901.907 kb on + strand, within artI at 902.066 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.289 kb on + strand at 902.302 kb on - strand, within artP
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 899,846 - +0.3 900,015 + +0.4 900,140 - +0.0 900,140 - +0.1 900,193 + artM b0861 0.16 -0.8 900,258 - artM b0861 0.25 -0.4 900,266 - artM b0861 0.26 +0.1 900,270 - artM b0861 0.27 -0.3 900,330 - artM b0861 0.36 -0.1 900,330 - artM b0861 0.36 -0.4 900,445 + artM b0861 0.53 -0.2 900,596 - artM b0861 0.76 +0.8 900,596 - artM b0861 0.76 -0.2 900,611 - artM b0861 0.78 -0.7 900,611 - artM b0861 0.78 +0.1 900,706 + -0.6 900,873 + artQ b0862 0.16 +0.0 901,049 + artQ b0862 0.41 +0.1 901,059 + artQ b0862 0.42 +0.0 901,088 + artQ b0862 0.46 -1.0 901,191 + artQ b0862 0.61 -1.4 901,191 + artQ b0862 0.61 -0.0 901,555 - artI b0863 0.10 -2.2 901,590 - artI b0863 0.15 -0.1 901,590 - artI b0863 0.15 -2.0 901,669 - artI b0863 0.26 -0.4 901,669 - artI b0863 0.26 -1.4 901,850 + artI b0863 0.51 +0.2 901,850 + artI b0863 0.51 -1.8 901,858 + artI b0863 0.52 -0.8 901,858 - artI b0863 0.52 -1.6 901,907 + artI b0863 0.58 -1.6 902,066 - artI b0863 0.80 -1.0 902,123 - artI b0863 0.88 -0.7 902,123 - artI b0863 0.88 -1.7 902,289 + +0.4 902,302 - artP b0864 0.10 +0.1
Or see this region's nucleotide sequence