Strain Fitness in Escherichia coli BW25113 around b3009

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
3,150,640	-	metC	b3008	0.32	-2.6
3,150,654	+	metC	b3008	0.33	-2.5
3,150,669	+	metC	b3008	0.35	-2.7
3,150,706	-	metC	b3008	0.38	-2.7
3,150,791	-	metC	b3008	0.45	-3.0
3,150,820	+	metC	b3008	0.47	-4.2
3,150,820	+	metC	b3008	0.47	-3.5
3,150,912	+	metC	b3008	0.55	-2.3
3,150,914	+	metC	b3008	0.55	-1.9
3,150,915	+	metC	b3008	0.55	-2.6
3,150,932	-	metC	b3008	0.57	-1.7
3,151,015	+				-2.0
3,151,015	+	metC	b3008	0.64	-1.9
3,151,028	+	metC	b3008	0.65	-2.5
3,151,038	-	metC	b3008	0.66	-4.1
3,151,038	-	metC	b3008	0.66	-3.0
3,151,074	-	metC	b3008	0.69	-2.3
3,151,074	-	metC	b3008	0.69	-2.9
3,151,120	+	metC	b3008	0.73	-2.7
3,151,125	+	metC	b3008	0.73	-2.0
3,151,138	-	metC	b3008	0.74	-3.0
3,151,216	+	metC	b3008	0.81	-2.7
3,151,216	+	metC	b3008	0.81	-4.6
3,151,237	+	metC	b3008	0.82	-2.9
3,151,274	-	metC	b3008	0.86	-3.2
3,151,376	+				-3.5
3,151,655	-	yghB	b3009	0.11	+0.1
3,151,859	+	yghB	b3009	0.42	+0.1
3,151,859	+	yghB	b3009	0.42	+0.8
3,151,867	-	yghB	b3009	0.43	+0.6
3,151,889	+	yghB	b3009	0.46	+0.6
3,151,889	+	yghB	b3009	0.46	+0.6
3,152,046	+	yghB	b3009	0.70	+1.4
3,152,046	+	yghB	b3009	0.70	+0.6
3,152,076	+	yghB	b3009	0.74	-0.2
3,152,084	-	yghB	b3009	0.76	+0.5
3,152,101	-	yghB	b3009	0.78	+0.2
3,152,101	-	yghB	b3009	0.78	+0.0
3,152,130	+	yghB	b3009	0.83	+0.2
3,152,133	+	yghB	b3009	0.83	+0.6
3,152,152	-	yghB	b3009	0.86	+0.2
3,152,153	-	yghB	b3009	0.86	-0.2
3,152,186	+				+0.3
3,152,256	+				-0.0
3,152,256	+				+0.1
3,152,280	+				-0.3
3,152,290	+				+0.8
3,152,290	+				+1.2
3,152,372	+				+0.3
3,152,377	+				+0.3
3,152,608	-	yqhC	b3010	0.34	-0.1
3,152,608	-	yqhC	b3010	0.34	-1.2
3,152,615	+	yqhC	b3010	0.35	+0.6
3,152,615	+	yqhC	b3010	0.35	+0.1
3,152,628	-	yqhC	b3010	0.36	+0.3
3,152,630	-	yqhC	b3010	0.36	-0.3
3,152,635	-	yqhC	b3010	0.37	-0.0
3,152,728	-	yqhC	b3010	0.46	+0.2
3,152,738	-	yqhC	b3010	0.47	+1.3
3,152,837	-	yqhC	b3010	0.58	-0.0
3,152,922	-	yqhC	b3010	0.67	-0.1
3,153,056	-	yqhC	b3010	0.81	-0.9