Strain Fitness in Escherichia coli BW25113 around b1171

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
1,220,533	+	ycgH	b4491	0.65	+0.2
1,220,541	-	ycgH	b4491	0.65	-0.3
1,220,723	+	ycgH	b4491	0.72	+0.2
1,220,863	+	ycgH	b4491	0.77	+0.1
1,220,907	+	ycgH	b4491	0.79	-1.6
1,220,907	+	ycgH	b4491	0.79	+0.1
1,220,922	-	ycgH	b4491	0.79	-0.4
1,220,932	-	ycgH	b4491	0.80	-0.5
1,220,932	-	ycgH	b4491	0.80	+2.2
1,221,029	-	ycgH	b4491	0.83	+0.8
1,221,103	-	ycgH	b4491	0.86	-0.4
1,221,128	+	ycgH	b4491	0.87	+0.1
1,221,137	+	ycgH	b4491	0.87	-0.5
1,221,137	+	ycgH	b4491	0.87	-0.5
1,221,271	+				+0.3
1,221,306	+				+0.3
1,221,396	+				-0.3
1,221,396	+				+0.5
1,221,424	-				+2.2
1,221,429	+				-0.5
1,221,429	+				-0.7
1,221,440	+				+0.2
1,221,440	+				+0.2
1,221,517	-				+0.9
1,221,549	-				-0.5
1,221,551	+				-0.9
1,221,552	+				-0.9
1,221,553	+				+0.6
1,221,553	-				-0.1
1,221,635	+	b1171	b1171	0.32	+1.6
1,221,815	-	b1171	b1171	0.87	-0.3
1,221,815	-	b1171	b1171	0.87	+0.6
1,221,892	-				-0.9
1,221,934	-	ymgG	b1172	0.19	+0.3
1,221,940	+	ymgG	b1172	0.21	-0.0
1,222,035	+	ymgG	b1172	0.49	-0.6
1,222,052	+	ymgG	b1172	0.54	+0.9
1,222,060	-	ymgG	b1172	0.56	+0.2
1,222,060	-	ymgG	b1172	0.56	+0.7
1,222,135	-	ymgG	b1172	0.78	+0.1
1,222,137	+	ymgG	b1172	0.78	+1.3
1,222,141	+	ymgG	b1172	0.79	-0.8
1,222,152	+	ymgG	b1172	0.83	-0.8
1,222,160	-	ymgG	b1172	0.85	+0.5
1,222,160	-	ymgG	b1172	0.85	+0.4
1,222,162	+	ymgG	b1172	0.86	+2.2
1,222,162	+	ymgG	b1172	0.86	-0.4
1,222,162	+	ymgG	b1172	0.86	-1.0
1,222,162	+	ymgG	b1172	0.86	+0.3
1,222,162	+	ymgG	b1172	0.86	+0.5
1,222,167	+	ymgG	b1172	0.87	-0.6
1,222,170	-	ymgG	b1172	0.88	-0.7
1,222,170	-	ymgG	b1172	0.88	+0.0
1,222,180	-				+0.4
1,222,219	+				+0.5
1,222,243	-	ymgI	b4593	0.17	+1.2
1,222,283	-	ymgI	b4593	0.40	-0.1
1,222,330	-	ymgI	b4593	0.67	+1.5
1,222,383	-				+0.2
1,222,415	+				+0.5
1,222,423	+				-1.7
1,222,423	+				-0.2
1,222,436	+				+0.2
1,222,512	+	ymgJ	b4594	0.13	+2.2
1,222,568	+	ymgJ	b4594	0.44	+0.8
1,222,571	-	ymgJ	b4594	0.45	+0.3
1,222,571	-	ymgJ	b4594	0.45	+1.2
1,222,583	-	ymgJ	b4594	0.52	+0.9
1,222,630	-	ymgJ	b4594	0.77	+0.0
1,222,630	-	ymgJ	b4594	0.77	+0.6
1,222,659	-				-0.2
1,222,703	-				+0.4
1,222,703	-				+0.6
1,222,703	-				-1.4
1,222,722	-				-0.5
1,222,753	+				-0.4
1,222,760	+				-0.4
1,222,760	+				+0.4
1,222,763	+				+0.2
1,222,768	-				-0.6
1,222,783	+				-0.1
1,222,846	+	ycgI	b4521	0.17	+0.3
1,222,857	-	ycgI	b4521	0.20	+0.3