Strain Fitness in Escherichia coli BW25113 around b0806
Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_sugar7 rep C; time point 1 |
---|---|---|---|---|---|
remove | |||||
840,054 | - | fiu | b0805 | 0.69 | -0.0 |
840,279 | + | fiu | b0805 | 0.79 | -0.0 |
840,279 | + | fiu | b0805 | 0.79 | +0.2 |
840,315 | + | fiu | b0805 | 0.81 | +0.5 |
840,315 | + | fiu | b0805 | 0.81 | +0.2 |
840,323 | - | fiu | b0805 | 0.81 | +0.1 |
840,323 | - | fiu | b0805 | 0.81 | +0.3 |
840,323 | - | fiu | b0805 | 0.81 | -0.1 |
840,324 | - | fiu | b0805 | 0.81 | +0.1 |
840,324 | - | fiu | b0805 | 0.81 | +0.0 |
840,361 | + | fiu | b0805 | 0.83 | -0.3 |
840,361 | + | fiu | b0805 | 0.83 | +0.1 |
840,380 | - | fiu | b0805 | 0.84 | -0.3 |
840,436 | - | fiu | b0805 | 0.86 | -0.3 |
840,436 | - | fiu | b0805 | 0.86 | -0.6 |
840,483 | - | fiu | b0805 | 0.88 | -0.3 |
840,539 | + | -0.1 | |||
840,539 | + | +0.2 | |||
840,820 | + | -0.3 | |||
840,832 | - | +0.3 | |||
840,832 | - | -0.2 | |||
841,192 | + | ybiM | b0806 | 0.66 | +0.1 |
841,223 | - | ybiM | b0806 | 0.78 | +0.5 |
841,327 | + | +0.2 | |||
841,327 | + | +0.3 | |||
841,546 | - | -0.5 | |||
841,559 | - | +0.1 | |||
841,559 | - | +0.4 | |||
841,559 | - | -0.2 | |||
841,658 | + | ybiN | b0807 | 0.11 | +0.8 |
841,678 | - | ybiN | b0807 | 0.13 | +0.1 |
841,682 | + | ybiN | b0807 | 0.14 | -0.0 |
841,689 | - | ybiN | b0807 | 0.14 | -0.2 |
841,769 | - | ybiN | b0807 | 0.23 | +0.3 |
841,792 | + | ybiN | b0807 | 0.26 | +0.0 |
841,976 | + | ybiN | b0807 | 0.45 | +0.1 |
841,979 | - | ybiN | b0807 | 0.46 | -0.6 |
841,986 | + | ybiN | b0807 | 0.46 | -0.4 |
842,073 | - | ybiN | b0807 | 0.56 | +0.2 |
842,220 | - | ybiN | b0807 | 0.72 | +0.2 |
Or see this region's nucleotide sequence