Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lnt and ybeX are separated by 24 nucleotides ybeX and ybeY are separated by 89 nucleotides ybeY and ybeZ overlap by 4 nucleotides
b0657: lnt - apolipoprotein N-acyltransferase (NCBI), at 688,566 to 690,104
lnt
b0658: ybeX - predicteed ion transport (NCBI), at 690,129 to 691,007
ybeX
b0659: ybeY - hypothetical protein (NCBI), at 691,097 to 691,564
ybeY
b0660: ybeZ - predicted protein with nucleoside triphosphate hydrolase domain (RefSeq), at 691,561 to 692,601
ybeZ
Position (kb) 690
691
692 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 690.152 kb on - strand at 690.252 kb on + strand, within ybeX at 690.312 kb on + strand, within ybeX at 690.370 kb on + strand, within ybeX at 690.378 kb on - strand, within ybeX at 690.378 kb on - strand, within ybeX at 690.415 kb on + strand, within ybeX at 690.415 kb on + strand, within ybeX at 690.435 kb on - strand, within ybeX at 690.457 kb on - strand, within ybeX at 690.457 kb on - strand, within ybeX at 690.517 kb on + strand, within ybeX at 690.589 kb on - strand, within ybeX at 690.609 kb on - strand, within ybeX at 690.713 kb on - strand, within ybeX at 690.779 kb on - strand, within ybeX at 690.795 kb on - strand, within ybeX at 690.795 kb on - strand, within ybeX at 690.809 kb on + strand, within ybeX at 690.817 kb on - strand, within ybeX at 691.017 kb on - strand at 691.646 kb on - strand at 691.668 kb on - strand, within ybeZ at 691.757 kb on + strand, within ybeZ at 691.757 kb on + strand, within ybeZ at 691.766 kb on - strand, within ybeZ at 691.793 kb on - strand, within ybeZ at 691.793 kb on - strand, within ybeZ at 691.842 kb on + strand, within ybeZ at 691.849 kb on - strand, within ybeZ
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 690,152 - +0.5 690,252 + ybeX b0658 0.14 +2.3 690,312 + ybeX b0658 0.21 +1.7 690,370 + ybeX b0658 0.27 -0.8 690,378 - ybeX b0658 0.28 +1.9 690,378 - ybeX b0658 0.28 +3.9 690,415 + ybeX b0658 0.33 +0.0 690,415 + ybeX b0658 0.33 +2.3 690,435 - ybeX b0658 0.35 +2.3 690,457 - ybeX b0658 0.37 +2.9 690,457 - ybeX b0658 0.37 +2.3 690,517 + ybeX b0658 0.44 +2.3 690,589 - ybeX b0658 0.52 +1.9 690,609 - ybeX b0658 0.55 +2.3 690,713 - ybeX b0658 0.66 +0.7 690,779 - ybeX b0658 0.74 -0.3 690,795 - ybeX b0658 0.76 +1.3 690,795 - ybeX b0658 0.76 +3.3 690,809 + ybeX b0658 0.77 +1.3 690,817 - ybeX b0658 0.78 -0.8 691,017 - -0.1 691,646 - +0.4 691,668 - ybeZ b0660 0.10 -0.4 691,757 + ybeZ b0660 0.19 +0.0 691,757 + ybeZ b0660 0.19 +0.1 691,766 - ybeZ b0660 0.20 -0.7 691,793 - ybeZ b0660 0.22 -1.1 691,793 - ybeZ b0660 0.22 -0.1 691,842 + ybeZ b0660 0.27 +1.0 691,849 - ybeZ b0660 0.28 -1.0
Or see this region's nucleotide sequence