Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafT and ykfM are separated by 136 nucleotides ykfM and yafU are separated by 9 nucleotides yafU and yafF are separated by 3 nucleotides yafF and yafV are separated by 40 nucleotides
b0217: yafT - predicted aminopeptidase (NCBI), at 237,335 to 238,120
yafT
b4586: ykfM - hypothetical protein, no homologs (RefSeq), at 238,257 to 238,736
ykfM
b0218: yafU - predicted inner membrane protein (RefSeq), at 238,746 to 239,102
yafU
b4503: yafF - no description, at 239,106 to 239,378
yafF
b0219: yafV - predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI), at 239,419 to 240,189
yafV
Position (kb) 238
239
240 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 237.775 kb on + strand, within yafT at 237.908 kb on - strand, within yafT at 237.911 kb on - strand, within yafT at 237.913 kb on + strand, within yafT at 237.937 kb on + strand, within yafT at 237.937 kb on + strand, within yafT at 237.943 kb on + strand, within yafT at 237.951 kb on + strand, within yafT at 237.953 kb on + strand, within yafT at 237.953 kb on + strand, within yafT at 237.963 kb on + strand, within yafT at 238.027 kb on + strand, within yafT at 238.027 kb on + strand, within yafT at 238.029 kb on + strand, within yafT at 238.036 kb on + strand, within yafT at 238.037 kb on + strand, within yafT at 238.037 kb on + strand, within yafT at 238.037 kb on + strand, within yafT at 238.037 kb on + strand, within yafT at 238.038 kb on + strand, within yafT at 238.046 kb on + strand at 238.046 kb on + strand at 238.063 kb on + strand at 238.063 kb on + strand at 238.734 kb on - strand at 238.901 kb on + strand, within yafU at 238.910 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 239.013 kb on + strand, within yafU at 239.013 kb on + strand, within yafU at 239.013 kb on + strand, within yafU at 239.036 kb on - strand, within yafU at 239.036 kb on - strand, within yafU at 239.163 kb on + strand, within yafF at 239.166 kb on + strand, within yafF at 239.392 kb on - strand at 239.412 kb on + strand at 239.414 kb on - strand at 239.417 kb on + strand at 239.426 kb on + strand at 239.436 kb on - strand at 239.436 kb on - strand at 239.850 kb on - strand, within yafV at 239.850 kb on - strand, within yafV at 239.907 kb on + strand, within yafV at 240.066 kb on + strand, within yafV at 240.072 kb on + strand, within yafV at 240.098 kb on - strand, within yafV
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 237,775 + yafT b0217 0.56 +0.2 237,908 - yafT b0217 0.73 +2.5 237,911 - yafT b0217 0.73 -0.1 237,913 + yafT b0217 0.74 +0.2 237,937 + yafT b0217 0.77 -0.1 237,937 + yafT b0217 0.77 +0.9 237,943 + yafT b0217 0.77 -0.8 237,951 + yafT b0217 0.78 -0.3 237,953 + yafT b0217 0.79 +0.7 237,953 + yafT b0217 0.79 -1.6 237,963 + yafT b0217 0.80 +0.4 238,027 + yafT b0217 0.88 +0.3 238,027 + yafT b0217 0.88 -1.0 238,029 + yafT b0217 0.88 +0.5 238,036 + yafT b0217 0.89 -0.2 238,037 + yafT b0217 0.89 -0.6 238,037 + yafT b0217 0.89 -0.4 238,037 + yafT b0217 0.89 -0.9 238,037 + yafT b0217 0.89 -0.1 238,038 + yafT b0217 0.89 +0.8 238,046 + +0.6 238,046 + -0.3 238,063 + -0.7 238,063 + -1.1 238,734 - +2.5 238,901 + yafU b0218 0.43 +2.5 238,910 - yafU b0218 0.46 +1.4 238,915 - yafU b0218 0.47 +1.8 238,915 - yafU b0218 0.47 -1.3 238,915 - yafU b0218 0.47 -1.3 239,013 + yafU b0218 0.75 +2.5 239,013 + yafU b0218 0.75 +1.5 239,013 + yafU b0218 0.75 +4.1 239,036 - yafU b0218 0.81 +0.9 239,036 - yafU b0218 0.81 +0.1 239,163 + yafF b4503 0.21 +1.1 239,166 + yafF b4503 0.22 +0.3 239,392 - -0.6 239,412 + +0.1 239,414 - -0.0 239,417 + -0.1 239,426 + +0.1 239,436 - -0.6 239,436 - +0.5 239,850 - yafV b0219 0.56 +0.5 239,850 - yafV b0219 0.56 +0.1 239,907 + yafV b0219 0.63 +0.3 240,066 + yafV b0219 0.84 +0.4 240,072 + yafV b0219 0.85 -0.3 240,098 - yafV b0219 0.88 -1.0
Or see this region's nucleotide sequence