Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fecR and fecI overlap by 4 nucleotides fecI and insA-7 are separated by 291 nucleotides insA-7 and insB-7 overlap by 82 nucleotides insB-7 and yjhU are separated by 113 nucleotides
b4292: fecR - KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport (NCBI), at 4,514,787 to 4,515,740
fecR
b4293: fecI - KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI), at 4,515,737 to 4,516,258
fecI
b4294: insA-7 - KpLE2 phage-like element; IS1 repressor protein InsA (NCBI), at 4,516,550 to 4,516,825
insA-7
b4576: insB-7 - no description, at 4,516,744 to 4,517,247
insB-7
b4295: yjhU - orf, hypothetical protein (VIMSS), at 4,517,361 to 4,518,347
yjhU
Position (kb) 4516
4517 Strain fitness (log2 ratio) -2
-1
0
1 at 4515.584 kb on - strand, within fecR at 4515.609 kb on - strand, within fecR at 4515.647 kb on + strand at 4515.669 kb on + strand at 4515.669 kb on + strand at 4515.702 kb on - strand at 4515.749 kb on + strand at 4515.756 kb on - strand at 4515.760 kb on + strand at 4515.770 kb on + strand at 4515.852 kb on - strand, within fecI at 4515.928 kb on - strand, within fecI at 4515.928 kb on - strand, within fecI at 4515.997 kb on + strand, within fecI at 4516.053 kb on + strand, within fecI at 4516.053 kb on + strand, within fecI at 4516.059 kb on + strand, within fecI at 4516.059 kb on + strand, within fecI at 4516.067 kb on - strand, within fecI at 4516.067 kb on - strand, within fecI at 4516.111 kb on - strand, within fecI at 4516.116 kb on - strand, within fecI at 4516.135 kb on - strand, within fecI at 4516.377 kb on + strand at 4516.417 kb on + strand at 4516.430 kb on + strand at 4516.456 kb on + strand at 4516.515 kb on + strand at 4516.515 kb on + strand at 4516.686 kb on - strand, within insA-7 at 4516.686 kb on - strand, within insA-7 at 4516.884 kb on + strand, within insB-7 at 4516.946 kb on + strand, within insB-7 at 4516.959 kb on - strand, within insB-7 at 4516.983 kb on + strand, within insB-7 at 4516.983 kb on + strand, within insB-7 at 4517.038 kb on - strand, within insB-7 at 4517.038 kb on - strand, within insB-7 at 4517.064 kb on - strand, within insB-7 at 4517.088 kb on + strand, within insB-7 at 4517.100 kb on + strand, within insB-7 at 4517.108 kb on - strand, within insB-7 at 4517.146 kb on + strand, within insB-7 at 4517.146 kb on + strand, within insB-7 at 4517.333 kb on + strand at 4517.341 kb on - strand at 4517.341 kb on - strand at 4517.341 kb on - strand at 4517.341 kb on - strand at 4517.377 kb on - strand at 4517.434 kb on + strand at 4517.439 kb on - strand at 4517.539 kb on - strand, within yjhU at 4517.710 kb on - strand, within yjhU at 4517.710 kb on - strand, within yjhU at 4517.738 kb on + strand, within yjhU at 4517.750 kb on + strand, within yjhU at 4517.778 kb on - strand, within yjhU at 4517.806 kb on - strand, within yjhU at 4517.806 kb on - strand, within yjhU
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 4,515,584 - fecR b4292 0.84 -0.1 4,515,609 - fecR b4292 0.86 +0.2 4,515,647 + -0.3 4,515,669 + +0.6 4,515,669 + +0.0 4,515,702 - -0.4 4,515,749 + -1.8 4,515,756 - +0.2 4,515,760 + +0.1 4,515,770 + +0.4 4,515,852 - fecI b4293 0.22 +0.0 4,515,928 - fecI b4293 0.37 +0.2 4,515,928 - fecI b4293 0.37 -0.5 4,515,997 + fecI b4293 0.50 +0.9 4,516,053 + fecI b4293 0.61 +1.2 4,516,053 + fecI b4293 0.61 -0.8 4,516,059 + fecI b4293 0.62 +0.4 4,516,059 + fecI b4293 0.62 -0.4 4,516,067 - fecI b4293 0.63 -0.1 4,516,067 - fecI b4293 0.63 -1.0 4,516,111 - fecI b4293 0.72 -0.4 4,516,116 - fecI b4293 0.73 +0.6 4,516,135 - fecI b4293 0.76 -0.7 4,516,377 + -0.0 4,516,417 + -0.4 4,516,430 + +0.7 4,516,456 + +0.3 4,516,515 + -1.3 4,516,515 + -0.2 4,516,686 - insA-7 b4294 0.49 +0.9 4,516,686 - insA-7 b4294 0.49 +0.4 4,516,884 + insB-7 b4576 0.28 +0.1 4,516,946 + insB-7 b4576 0.40 -0.1 4,516,959 - insB-7 b4576 0.43 -0.1 4,516,983 + insB-7 b4576 0.47 +0.5 4,516,983 + insB-7 b4576 0.47 +0.1 4,517,038 - insB-7 b4576 0.58 +0.3 4,517,038 - insB-7 b4576 0.58 +0.3 4,517,064 - insB-7 b4576 0.63 -0.3 4,517,088 + insB-7 b4576 0.68 +0.3 4,517,100 + insB-7 b4576 0.71 +0.4 4,517,108 - insB-7 b4576 0.72 +0.1 4,517,146 + insB-7 b4576 0.80 -0.3 4,517,146 + insB-7 b4576 0.80 -0.6 4,517,333 + +0.0 4,517,341 - +0.9 4,517,341 - +0.0 4,517,341 - +0.4 4,517,341 - +0.2 4,517,377 - -0.1 4,517,434 + +0.3 4,517,439 - +0.0 4,517,539 - yjhU b4295 0.18 -0.1 4,517,710 - yjhU b4295 0.35 +0.7 4,517,710 - yjhU b4295 0.35 -0.7 4,517,738 + yjhU b4295 0.38 +0.1 4,517,750 + yjhU b4295 0.39 -0.1 4,517,778 - yjhU b4295 0.42 +0.0 4,517,806 - yjhU b4295 0.45 -0.1 4,517,806 - yjhU b4295 0.45 -0.3
Or see this region's nucleotide sequence