Strain Fitness in Escherichia coli BW25113 around b3769

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,949,265	+	ilvG	b4488	0.41	-0.3
3,949,308	-	ilvG	b4488	0.44	+0.1
3,949,330	-	ilvG	b4488	0.45	-0.6
3,949,360	+	ilvG	b4488	0.47	-0.0
3,949,360	+	ilvG	b4488	0.47	+0.1
3,949,368	-	ilvG	b4488	0.48	-0.2
3,949,370	-	ilvG	b4488	0.48	-0.6
3,949,438	-	ilvG	b4488	0.52	+0.3
3,949,443	+	ilvG	b4488	0.52	-0.1
3,949,443	+	ilvG	b4488	0.52	-0.0
3,949,443	+	ilvG	b4488	0.52	+0.4
3,949,443	+	ilvG	b4488	0.52	+0.1
3,949,461	-	ilvG	b4488	0.53	-0.1
3,949,462	+	ilvG	b4488	0.53	+0.8
3,949,462	+	ilvG	b4488	0.53	-0.4
3,949,462	+	ilvG	b4488	0.53	+0.9
3,949,513	-	ilvG	b4488	0.57	+0.3
3,949,533	+	ilvG	b4488	0.58	+0.1
3,949,533	+	ilvG	b4488	0.58	-0.1
3,949,533	+	ilvG	b4488	0.58	+0.2
3,949,566	+	ilvG	b4488	0.60	+0.2
3,949,566	+	ilvG	b4488	0.60	+0.2
3,949,571	+	ilvG	b4488	0.60	-0.1
3,949,571	+	ilvG	b4488	0.60	+0.9
3,949,577	-	ilvG	b4488	0.60	-0.6
3,949,618	-	ilvG	b4488	0.63	-0.5
3,949,714	+	ilvG	b4488	0.69	+0.8
3,949,717	+	ilvG	b4488	0.69	+0.8
3,949,722	+	ilvG	b4488	0.69	+0.3
3,949,722	+	ilvG	b4488	0.69	+0.0
3,949,725	-	ilvG	b4488	0.69	+0.1
3,949,725	-	ilvG	b4488	0.69	+1.3
3,949,725	-	ilvG	b4488	0.69	-1.2
3,949,732	+	ilvG	b4488	0.70	+0.7
3,949,732	+	ilvG	b4488	0.70	+0.9
3,949,789	+	ilvG	b4488	0.73	+0.7
3,949,837	-	ilvG	b4488	0.76	-0.1
3,949,839	-	ilvG	b4488	0.76	-0.1
3,949,839	-	ilvG	b4488	0.76	+0.0
3,949,863	-	ilvG	b4488	0.78	-1.4
3,949,951	+	ilvG	b4488	0.83	+1.1
3,949,959	-	ilvG	b4488	0.84	-0.1
3,950,004	+	ilvG	b4488	0.86	+0.2
3,950,004	+	ilvG	b4488	0.86	+0.6
3,950,063	+				+0.7
3,950,064	+				+0.9
3,950,106	+				+1.3
3,950,109	-				+0.3
3,950,109	-				-0.5
3,950,111	+				-0.4
3,950,119	-				-0.9
3,950,119	-				+0.0
3,950,119	-				+1.0
3,950,121	+				+0.7
3,950,121	+				+1.6
3,950,127	+				+1.1
3,950,140	-				+0.1
3,950,140	-				+0.3
3,950,228	+				+1.2
3,950,251	-	ilvM	b3769	0.10	+0.3
3,950,301	-	ilvM	b3769	0.29	+0.5
3,950,301	-	ilvM	b3769	0.29	+0.3
3,950,381	+	ilvM	b3769	0.59	+0.8
3,950,381	+	ilvM	b3769	0.59	+0.7
3,950,381	+	ilvM	b3769	0.59	+1.1
3,950,381	+	ilvM	b3769	0.59	+0.7
3,950,381	+	ilvM	b3769	0.59	+0.5
3,950,389	-	ilvM	b3769	0.62	+0.4
3,950,456	+	ilvM	b3769	0.88	-3.6
3,950,475	-				-0.6
3,950,475	-				-0.1
3,950,478	-				-0.6
3,950,478	-				+0.1
3,950,592	-				-3.1
3,950,599	-				-3.5
3,950,631	+	ilvE	b3770	0.13	-3.0
3,950,631	+	ilvE	b3770	0.13	-4.9
3,950,654	+	ilvE	b3770	0.16	-3.9
3,950,654	+	ilvE	b3770	0.16	-3.6
3,950,654	+	ilvE	b3770	0.16	-2.4
3,950,675	+	ilvE	b3770	0.18	-4.8
3,950,675	+	ilvE	b3770	0.18	-3.7
3,950,695	-	ilvE	b3770	0.20	-4.4
3,950,713	+	ilvE	b3770	0.22	-5.2
3,950,789	+	ilvE	b3770	0.30	-3.5
3,950,789	+	ilvE	b3770	0.30	-3.6
3,950,789	+	ilvE	b3770	0.30	-2.3
3,950,797	-	ilvE	b3770	0.31	-2.9
3,950,797	-	ilvE	b3770	0.31	-3.3
3,950,797	-	ilvE	b3770	0.31	-2.9
3,950,798	-	ilvE	b3770	0.31	-4.4
3,950,822	-	ilvE	b3770	0.34	-3.2
3,950,822	-	ilvE	b3770	0.34	-4.4
3,950,828	-	ilvE	b3770	0.35	-3.9
3,950,832	+	ilvE	b3770	0.35	-5.8
3,950,851	+	ilvE	b3770	0.37	-3.3
3,950,851	+	ilvE	b3770	0.37	-5.0
3,950,942	+	ilvE	b3770	0.47	-4.0
3,950,948	-	ilvE	b3770	0.47	-3.6
3,950,952	+	ilvE	b3770	0.48	-4.7
3,950,967	-	ilvE	b3770	0.49	-2.9
3,951,009	-	ilvE	b3770	0.54	-3.5
3,951,022	-	ilvE	b3770	0.55	-4.0
3,951,054	+	ilvE	b3770	0.59	-3.8
3,951,057	-	ilvE	b3770	0.59	-3.3
3,951,164	+	ilvE	b3770	0.71	-1.3
3,951,164	+	ilvE	b3770	0.71	-3.8
3,951,168	-	ilvE	b3770	0.71	-4.0
3,951,170	+	ilvE	b3770	0.71	-3.5
3,951,171	-	ilvE	b3770	0.71	-3.8
3,951,242	+	ilvE	b3770	0.79	-3.9
3,951,247	+	ilvE	b3770	0.80	-4.4
3,951,314	-	ilvE	b3770	0.87	-4.0
3,951,315	+	ilvE	b3770	0.87	-2.0
3,951,323	-	ilvE	b3770	0.88	-3.1
3,951,323	-	ilvE	b3770	0.88	-2.8
3,951,334	+	ilvE	b3770	0.89	-4.4
3,951,390	-				-3.5
3,951,461	-				-1.1
3,951,461	-				+0.1