Strain Fitness in Escherichia coli BW25113 around b3101

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,247,616	+	yqjD	b3098	0.72	+0.4
3,247,616	+	yqjD	b3098	0.72	+0.5
3,247,649	+	yqjD	b3098	0.82	-0.5
3,247,784	+	yqjE	b3099	0.20	+0.1
3,247,801	-	yqjE	b3099	0.24	-0.2
3,247,801	-	yqjE	b3099	0.24	-0.3
3,247,995	+	yqjE	b3099	0.72	-0.1
3,248,030	+	yqjE	b3099	0.80	+0.0
3,248,030	+	yqjE	b3099	0.80	+0.1
3,248,030	+	yqjE	b3099	0.80	-1.4
3,248,041	-	yqjE	b3099	0.83	-0.8
3,248,076	+				-0.2
3,248,140	-	yqjK	b3100	0.14	+0.2
3,248,140	-	yqjK	b3100	0.14	+0.2
3,248,162	+	yqjK	b3100	0.21	-0.3
3,248,281	+	yqjK	b3100	0.61	+0.3
3,248,281	+	yqjK	b3100	0.61	+0.3
3,248,309	-	yqjK	b3100	0.70	+0.1
3,248,309	-	yqjK	b3100	0.70	-0.2
3,248,323	-	yqjK	b3100	0.75	-0.1
3,248,326	+	yqjK	b3100	0.76	-0.3
3,248,384	-				-0.4
3,248,676	+	yqjF	b3101	0.23	+0.5
3,248,790	+	yqjF	b3101	0.52	+0.0
3,248,797	+	yqjF	b3101	0.54	+0.5
3,248,940	+				+0.1
3,248,948	-				-0.5
3,249,159	-	yqjG	b3102	0.11	-1.0
3,249,159	-	yqjG	b3102	0.11	+0.1
3,249,259	-	yqjG	b3102	0.22	-0.7
3,249,267	+	yqjG	b3102	0.22	-0.3
3,249,309	-	yqjG	b3102	0.27	+1.2
3,249,309	-	yqjG	b3102	0.27	+0.4
3,249,335	+	yqjG	b3102	0.29	+0.3
3,249,347	-	yqjG	b3102	0.30	+0.2
3,249,347	-	yqjG	b3102	0.30	+0.5
3,249,420	+	yqjG	b3102	0.38	+0.3
3,249,436	+	yqjG	b3102	0.40	+0.3
3,249,499	-	yqjG	b3102	0.46	+0.4
3,249,684	-	yqjG	b3102	0.65	+0.7
3,249,706	+	yqjG	b3102	0.67	-0.1
3,249,706	+	yqjG	b3102	0.67	+0.8
3,249,799	+	yqjG	b3102	0.76	+1.7
3,249,799	+	yqjG	b3102	0.76	+1.6
3,249,806	-	yqjG	b3102	0.77	+0.1
3,249,806	-	yqjG	b3102	0.77	-0.1
3,249,806	-	yqjG	b3102	0.77	+0.2
3,249,853	-	yqjG	b3102	0.82	-0.1
3,249,901	-	yqjG	b3102	0.87	+0.1