Strain Fitness in Escherichia coli BW25113 around b3034

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,174,303	-	cpdA	b3032	0.33	-0.5
3,174,332	+	cpdA	b3032	0.37	-0.5
3,174,332	+	cpdA	b3032	0.37	-0.2
3,174,373	-	cpdA	b3032	0.42	-1.2
3,174,373	-	cpdA	b3032	0.42	+0.5
3,174,405	+	cpdA	b3032	0.46	-0.5
3,174,433	-	cpdA	b3032	0.49	-0.1
3,174,457	+	cpdA	b3032	0.52	+0.0
3,174,503	+	cpdA	b3032	0.57	-0.1
3,174,506	+	cpdA	b3032	0.58	-0.3
3,174,647	+	cpdA	b3032	0.75	-0.3
3,174,694	+	cpdA	b3032	0.80	-0.5
3,174,749	+	cpdA	b3032	0.87	-0.3
3,174,749	+	cpdA	b3032	0.87	-1.4
3,174,749	+	cpdA	b3032	0.87	+0.3
3,174,791	-				-0.4
3,174,825	-				-0.3
3,174,825	-				-0.4
3,174,905	-				+0.4
3,174,915	-				-0.1
3,174,927	-	yqiB	b3033	0.11	+0.6
3,175,065	+	yqiB	b3033	0.44	-0.8
3,175,116	+	yqiB	b3033	0.56	+0.1
3,175,126	+	yqiB	b3033	0.58	-0.4
3,175,171	-	yqiB	b3033	0.69	+0.2
3,175,226	+	yqiB	b3033	0.82	+0.1
3,175,399	-	nudF	b3034	0.15	+0.4
3,175,469	-	nudF	b3034	0.26	+1.2
3,175,494	-	nudF	b3034	0.30	+0.7
3,175,494	-	nudF	b3034	0.30	+1.2
3,175,528	-	nudF	b3034	0.36	+0.5
3,175,577	+	nudF	b3034	0.43	-0.9
3,175,585	+	nudF	b3034	0.45	+0.1
3,175,590	-	nudF	b3034	0.46	-0.1
3,175,662	+	nudF	b3034	0.57	-0.1
3,175,679	+	nudF	b3034	0.60	+0.4
3,175,679	+	nudF	b3034	0.60	-0.2
3,175,752	-	nudF	b3034	0.71	+0.6
3,175,798	+	nudF	b3034	0.79	+0.2
3,175,818	-	nudF	b3034	0.82	+0.8
3,175,823	-	nudF	b3034	0.83	+0.4
3,175,871	-				+0.7
3,176,030	-				+0.3
3,176,031	+				-0.0
3,176,119	-				+0.9
3,176,119	-				+0.8
3,176,173	-				+0.4
3,176,173	-				+0.3
3,176,174	+				-0.3
3,176,182	-				+0.5
3,176,208	-				-0.6
3,176,271	+				-0.4
3,176,271	+				-1.4
3,176,304	+	tolC	b3035	0.11	-1.1
3,176,309	+	tolC	b3035	0.12	+0.1
3,176,309	+	tolC	b3035	0.12	-0.6
3,176,349	-	tolC	b3035	0.14	+0.7
3,176,378	+	tolC	b3035	0.16	-0.3
3,176,493	+	tolC	b3035	0.24	+0.5
3,176,526	-	tolC	b3035	0.26	-1.0
3,176,571	+	tolC	b3035	0.29	-0.0
3,176,573	+	tolC	b3035	0.29	-0.3
3,176,581	-	tolC	b3035	0.30	+0.8
3,176,635	+	tolC	b3035	0.34	-2.3
3,176,638	-	tolC	b3035	0.34	-0.2
3,176,654	-	tolC	b3035	0.35	-1.9
3,176,680	-	tolC	b3035	0.37	-2.2
3,176,680	-	tolC	b3035	0.37	+0.5
3,176,682	+	tolC	b3035	0.37	+0.4
3,176,692	-	tolC	b3035	0.37	-0.0
3,176,716	+	tolC	b3035	0.39	-0.2
3,176,716	+	tolC	b3035	0.39	-0.2
3,176,844	-	tolC	b3035	0.48	-1.0
3,176,844	-	tolC	b3035	0.48	-0.8
3,176,869	-	tolC	b3035	0.49	-0.4
3,176,869	-	tolC	b3035	0.49	-1.3
3,176,887	+	tolC	b3035	0.51	-2.0
3,176,887	+	tolC	b3035	0.51	-0.5
3,176,887	+	tolC	b3035	0.51	-1.0
3,176,932	+	tolC	b3035	0.54	-0.7