Strain Fitness in Escherichia coli BW25113 around b2603

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
2,738,897	+	aroF	b2601	0.74	-2.6
2,738,899	+	aroF	b2601	0.74	-1.3
2,738,905	+	aroF	b2601	0.75	-5.2
2,738,926	+	aroF	b2601	0.77	-1.6
2,738,926	+	aroF	b2601	0.77	-1.1
2,738,945	-	aroF	b2601	0.79	-0.0
2,738,999	-	aroF	b2601	0.84	-0.5
2,738,999	-	aroF	b2601	0.84	+0.4
2,739,001	+	aroF	b2601	0.84	-3.7
2,739,008	-	aroF	b2601	0.85	+1.2
2,739,008	-	aroF	b2601	0.85	+0.9
2,739,420	+	yfiL	b2602	0.10	-0.3
2,739,431	+	yfiL	b2602	0.13	-0.4
2,739,431	+	yfiL	b2602	0.13	-0.3
2,739,470	+	yfiL	b2602	0.24	-0.1
2,739,473	-	yfiL	b2602	0.25	+0.1
2,739,478	-	yfiL	b2602	0.26	+0.7
2,739,478	-	yfiL	b2602	0.26	+0.1
2,739,479	+	yfiL	b2602	0.27	+0.2
2,739,490	+	yfiL	b2602	0.30	-0.1
2,739,492	-	yfiL	b2602	0.30	+1.1
2,739,499	-	yfiL	b2602	0.32	+0.8
2,739,499	-	yfiL	b2602	0.32	-0.3
2,739,545	+	yfiL	b2602	0.45	+0.0
2,739,545	+	yfiL	b2602	0.45	-0.1
2,739,571	+	yfiL	b2602	0.52	+0.0
2,739,571	-	yfiL	b2602	0.52	-1.0
2,739,571	-	yfiL	b2602	0.52	+1.6
2,739,575	-	yfiL	b2602	0.53	+0.6
2,739,575	-	yfiL	b2602	0.53	-1.8
2,739,577	+	yfiL	b2602	0.53	+0.7
2,739,578	-	yfiL	b2602	0.54	+0.6
2,739,578	-	yfiL	b2602	0.54	-0.1
2,739,588	-	yfiL	b2602	0.56	+0.3
2,739,650	+	yfiL	b2602	0.73	+0.4
2,739,676	-	yfiL	b2602	0.80	+0.4
2,739,676	-	yfiL	b2602	0.80	+0.3
2,739,677	+	yfiL	b2602	0.81	-0.1
2,739,677	+	yfiL	b2602	0.81	+0.1
2,739,697	+	yfiL	b2602	0.86	-0.1
2,739,697	+	yfiL	b2602	0.86	+0.3
2,739,705	-	yfiL	b2602	0.88	+0.6
2,739,817	-				-0.1
2,739,914	+				+0.9
2,739,914	+				-1.0
2,739,951	-	yfiR	b2603	0.10	-0.8
2,739,959	+	yfiR	b2603	0.12	-0.8
2,739,963	-	yfiR	b2603	0.13	-1.2
2,739,967	-	yfiR	b2603	0.13	-1.6
2,739,969	-	yfiR	b2603	0.14	-0.5
2,739,970	+	yfiR	b2603	0.14	+0.1
2,739,970	-	yfiR	b2603	0.14	-1.7
2,740,012	-	yfiR	b2603	0.22	-2.1
2,740,021	-	yfiR	b2603	0.24	-2.4
2,740,081	+	yfiR	b2603	0.35	-4.0
2,740,090	+	yfiR	b2603	0.37	-4.1
2,740,092	+	yfiR	b2603	0.38	-5.0
2,740,092	+	yfiR	b2603	0.38	-3.4
2,740,127	+	yfiR	b2603	0.44	-1.6
2,740,127	+	yfiR	b2603	0.44	-3.0
2,740,127	+	yfiR	b2603	0.44	-2.9
2,740,146	+	yfiR	b2603	0.48	-4.4
2,740,146	+	yfiR	b2603	0.48	-2.5
2,740,146	+	yfiR	b2603	0.48	-3.7
2,740,154	-	yfiR	b2603	0.50	-1.8
2,740,233	-	yfiR	b2603	0.65	-1.4
2,740,284	-	yfiR	b2603	0.75	-1.4
2,740,284	-	yfiR	b2603	0.75	-2.3
2,740,313	-	yfiR	b2603	0.80	-3.5
2,740,357	+	yfiR	b2603	0.89	-3.6
2,740,357	+	yfiR	b2603	0.89	-2.6
2,740,360	+	yfiR	b2603	0.89	-4.2
2,740,362	+	yfiR	b2603	0.90	-2.4
2,740,362	+	yfiR	b2603	0.90	-2.4
2,740,365	-				-0.1
2,740,368	-				-1.6
2,740,368	-				-0.4
2,740,368	-				-1.4
2,740,368	-				-1.9
2,740,368	-				-1.1
2,740,368	-				-2.1
2,740,368	-				-3.1
2,740,380	-				-0.9
2,740,388	-				-1.1
2,740,390	-				-3.7
2,740,441	+				+0.1
2,740,463	+				+0.7
2,740,478	+				-0.2
2,740,490	-				-0.5
2,740,536	-				+0.3
2,740,592	-	yfiN	b2604	0.15	+0.2
2,740,622	+	yfiN	b2604	0.18	+1.3
2,740,622	+	yfiN	b2604	0.18	+0.1
2,740,632	+	yfiN	b2604	0.19	+0.2
2,740,661	-	yfiN	b2604	0.21	-0.0
2,740,786	-	yfiN	b2604	0.31	+0.6
2,740,786	-	yfiN	b2604	0.31	+0.2
2,740,786	-	yfiN	b2604	0.31	+0.2
2,740,786	-	yfiN	b2604	0.31	+0.0
2,740,888	+	yfiN	b2604	0.39	+0.3
2,740,898	+	yfiN	b2604	0.40	+0.2
2,740,987	+	yfiN	b2604	0.47	-0.1
2,740,987	+	yfiN	b2604	0.47	+0.4
2,741,136	+	yfiN	b2604	0.60	-0.0
2,741,136	+	yfiN	b2604	0.60	-0.1
2,741,149	+	yfiN	b2604	0.61	+0.1
2,741,289	+	yfiN	b2604	0.72	-0.9
2,741,397	+	yfiN	b2604	0.81	-0.5
2,741,397	+	yfiN	b2604	0.81	-0.5
2,741,407	-	yfiN	b2604	0.82	+0.3
2,741,414	-	yfiN	b2604	0.82	+0.4