Strain Fitness in Escherichia coli BW25113 around b1763
Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_sugar7 rep B; time point 1 |
---|---|---|---|---|---|
remove | |||||
1,842,093 | - | b1762 | b1762 | 0.23 | +1.1 |
1,842,109 | + | b1762 | b1762 | 0.24 | -0.3 |
1,842,109 | - | b1762 | b1762 | 0.24 | -0.8 |
1,842,174 | + | b1762 | b1762 | 0.31 | -0.9 |
1,842,219 | + | b1762 | b1762 | 0.35 | -0.4 |
1,842,285 | - | b1762 | b1762 | 0.41 | +0.5 |
1,842,285 | - | b1762 | b1762 | 0.41 | +0.5 |
1,842,285 | - | b1762 | b1762 | 0.41 | -0.2 |
1,842,298 | - | b1762 | b1762 | 0.43 | +2.1 |
1,842,331 | + | b1762 | b1762 | 0.46 | +2.1 |
1,842,362 | - | b1762 | b1762 | 0.49 | +2.4 |
1,842,362 | - | b1762 | b1762 | 0.49 | -0.1 |
1,842,376 | - | b1762 | b1762 | 0.50 | +1.1 |
1,842,378 | + | b1762 | b1762 | 0.50 | +0.4 |
1,842,378 | + | b1762 | b1762 | 0.50 | +1.1 |
1,842,380 | + | b1762 | b1762 | 0.50 | +0.5 |
1,842,380 | + | b1762 | b1762 | 0.50 | +1.1 |
1,842,386 | - | b1762 | b1762 | 0.51 | +0.5 |
1,842,390 | + | b1762 | b1762 | 0.51 | +2.1 |
1,842,499 | + | b1762 | b1762 | 0.62 | -1.7 |
1,842,541 | + | b1762 | b1762 | 0.66 | +0.4 |
1,842,550 | + | b1762 | b1762 | 0.67 | +3.1 |
1,842,574 | + | b1762 | b1762 | 0.69 | +1.1 |
1,842,938 | - | +1.3 | |||
1,842,938 | - | -1.4 | |||
1,843,030 | - | +0.4 | |||
1,843,030 | - | +0.0 | |||
1,843,036 | - | -1.0 | |||
1,843,180 | + | -0.3 | |||
1,843,182 | + | -1.6 | |||
1,843,714 | - | topB | b1763 | 0.35 | +0.4 |
1,844,351 | + | topB | b1763 | 0.68 | -0.1 |
1,844,438 | + | topB | b1763 | 0.72 | +0.4 |
1,844,443 | + | topB | b1763 | 0.72 | +1.0 |
1,844,600 | - | topB | b1763 | 0.80 | +0.1 |
1,844,829 | - | -0.5 | |||
1,845,230 | - | selD | b1764 | 0.23 | -0.1 |
1,845,242 | - | selD | b1764 | 0.24 | +0.2 |
1,845,254 | - | selD | b1764 | 0.25 | +0.0 |
1,845,300 | - | selD | b1764 | 0.30 | -0.2 |
1,845,827 | - | selD | b1764 | 0.80 | -0.7 |
1,845,827 | - | selD | b1764 | 0.80 | -0.9 |
1,845,858 | - | selD | b1764 | 0.83 | -0.4 |
1,845,881 | - | selD | b1764 | 0.85 | -0.0 |
1,845,883 | - | selD | b1764 | 0.86 | -0.3 |
Or see this region's nucleotide sequence