Strain Fitness in Escherichia coli BW25113 around b1755
Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_sugar7 rep B; time point 1 |
---|---|---|---|---|---|
remove | |||||
1,834,332 | - | b1754 | b1754 | 0.20 | -0.0 |
1,834,427 | + | b1754 | b1754 | 0.28 | -0.3 |
1,834,893 | + | b1754 | b1754 | 0.68 | +0.6 |
1,835,210 | + | +0.3 | |||
1,835,210 | + | +0.2 | |||
1,835,245 | - | -0.0 | |||
1,835,495 | + | ynjC | b1755 | 0.17 | +0.1 |
1,835,643 | - | ynjC | b1755 | 0.26 | -0.4 |
1,835,649 | - | ynjC | b1755 | 0.27 | +0.1 |
1,835,682 | + | ynjC | b1755 | 0.29 | +0.5 |
1,835,896 | + | ynjC | b1755 | 0.43 | +0.2 |
1,835,896 | + | ynjC | b1755 | 0.43 | +0.7 |
1,835,982 | - | ynjC | b1755 | 0.49 | +0.5 |
1,835,982 | - | ynjC | b1755 | 0.49 | +0.6 |
1,836,212 | - | ynjC | b1755 | 0.64 | +0.3 |
1,836,387 | + | ynjC | b1755 | 0.75 | +1.1 |
1,836,584 | - | ynjC | b1755 | 0.88 | +0.9 |
1,836,773 | - | +0.7 | |||
1,836,840 | - | ynjD | b1756 | 0.11 | +0.1 |
1,837,048 | - | ynjD | b1756 | 0.42 | +0.1 |
1,837,083 | + | ynjD | b1756 | 0.48 | +0.4 |
1,837,152 | + | ynjD | b1756 | 0.58 | +0.4 |
1,837,203 | - | ynjD | b1756 | 0.66 | -0.6 |
1,837,203 | - | ynjD | b1756 | 0.66 | +0.6 |
1,837,248 | + | ynjD | b1756 | 0.73 | -0.7 |
1,837,272 | - | ynjD | b1756 | 0.77 | +0.2 |
Or see this region's nucleotide sequence