Strain Fitness in Escherichia coli BW25113 around b0218
Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_sugar7 rep B; time point 1 |
---|---|---|---|---|---|
remove | |||||
237,775 | + | yafT | b0217 | 0.56 | +0.2 |
237,908 | - | yafT | b0217 | 0.73 | +4.1 |
237,911 | - | yafT | b0217 | 0.73 | -0.1 |
237,913 | + | yafT | b0217 | 0.74 | +0.2 |
237,937 | + | yafT | b0217 | 0.77 | +0.3 |
237,937 | + | yafT | b0217 | 0.77 | +0.3 |
237,943 | + | yafT | b0217 | 0.77 | -0.8 |
237,951 | + | yafT | b0217 | 0.78 | +0.2 |
237,953 | + | yafT | b0217 | 0.79 | -1.9 |
237,953 | + | yafT | b0217 | 0.79 | +0.4 |
237,963 | + | yafT | b0217 | 0.80 | +0.8 |
238,027 | + | yafT | b0217 | 0.88 | -1.3 |
238,027 | + | yafT | b0217 | 0.88 | -0.4 |
238,029 | + | yafT | b0217 | 0.88 | -1.0 |
238,036 | + | yafT | b0217 | 0.89 | -0.3 |
238,037 | + | yafT | b0217 | 0.89 | +0.9 |
238,037 | + | yafT | b0217 | 0.89 | +1.5 |
238,037 | + | yafT | b0217 | 0.89 | -0.3 |
238,037 | + | yafT | b0217 | 0.89 | -0.4 |
238,038 | + | yafT | b0217 | 0.89 | +0.8 |
238,046 | + | -0.4 | |||
238,046 | + | +0.8 | |||
238,063 | + | +0.6 | |||
238,063 | + | +0.1 | |||
238,734 | - | +2.5 | |||
238,901 | + | yafU | b0218 | 0.43 | +2.5 |
238,910 | - | yafU | b0218 | 0.46 | +0.9 |
238,915 | - | yafU | b0218 | 0.47 | +0.9 |
238,915 | - | yafU | b0218 | 0.47 | +1.3 |
238,915 | - | yafU | b0218 | 0.47 | +0.2 |
239,013 | + | yafU | b0218 | 0.75 | +2.5 |
239,013 | + | yafU | b0218 | 0.75 | +1.5 |
239,013 | + | yafU | b0218 | 0.75 | +2.5 |
239,036 | - | yafU | b0218 | 0.81 | +1.1 |
239,036 | - | yafU | b0218 | 0.81 | +0.3 |
239,163 | + | yafF | b4503 | 0.21 | +0.1 |
239,166 | + | yafF | b4503 | 0.22 | -0.1 |
239,392 | - | +1.1 | |||
239,412 | + | -0.5 | |||
239,414 | - | -0.4 | |||
239,417 | + | -0.2 | |||
239,426 | + | -0.1 | |||
239,436 | - | -0.6 | |||
239,436 | - | +0.3 | |||
239,850 | - | yafV | b0219 | 0.56 | +0.3 |
239,850 | - | yafV | b0219 | 0.56 | -0.4 |
239,907 | + | yafV | b0219 | 0.63 | +0.4 |
240,066 | + | yafV | b0219 | 0.84 | +0.4 |
240,072 | + | yafV | b0219 | 0.85 | +0.2 |
240,098 | - | yafV | b0219 | 0.88 | -0.0 |
Or see this region's nucleotide sequence