Strain Fitness in Escherichia coli BW25113 around b2763

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
2,885,415	-	sokX	b4701	0.70	-0.1
2,885,443	+				+2.3
2,885,448	-				+0.7
2,885,451	+				+0.1
2,885,451	+				+2.3
2,885,455	+				-1.5
2,885,455	+				+0.1
2,885,456	+				+0.7
2,885,464	-				+2.3
2,885,479	+				-1.0
2,885,479	+				+1.3
2,885,482	+				-0.1
2,885,482	+				-0.8
2,885,484	+				+1.9
2,885,484	+				-2.2
2,885,484	+				-1.0
2,885,573	-				-0.1
2,885,616	-				-1.9
2,885,616	-				-3.0
2,885,616	-				-1.5
2,885,617	-				-4.8
2,885,691	-	cysH	b2762	0.12	-3.3
2,885,697	-	cysH	b2762	0.13	-2.4
2,885,742	-	cysH	b2762	0.19	-4.5
2,885,767	-	cysH	b2762	0.23	-3.1
2,885,767	-	cysH	b2762	0.23	-2.9
2,885,777	-	cysH	b2762	0.24	-3.4
2,885,806	-	cysH	b2762	0.28	-4.4
2,885,807	-	cysH	b2762	0.28	-4.0
2,885,807	-	cysH	b2762	0.28	-3.6
2,885,808	-	cysH	b2762	0.28	-4.3
2,885,812	-	cysH	b2762	0.29	-3.0
2,885,812	-	cysH	b2762	0.29	-3.8
2,885,826	-	cysH	b2762	0.31	-2.3
2,885,854	-	cysH	b2762	0.35	-1.4
2,885,855	-	cysH	b2762	0.35	-4.0
2,885,857	+	cysH	b2762	0.35	+1.3
2,885,877	+	cysH	b2762	0.38	-0.5
2,885,877	-	cysH	b2762	0.38	-3.2
2,885,896	-	cysH	b2762	0.40	-4.2
2,885,913	-	cysH	b2762	0.43	-4.1
2,885,920	-	cysH	b2762	0.44	-4.1
2,885,928	+	cysH	b2762	0.45	-2.2
2,885,977	-	cysH	b2762	0.51	-4.3
2,885,977	-	cysH	b2762	0.51	-3.4
2,886,023	-	cysH	b2762	0.58	-4.5
2,886,035	-				-1.5
2,886,141	+	cysH	b2762	0.74	-3.6
2,886,157	-	cysH	b2762	0.76	-3.1
2,886,451	-				-0.2
2,886,451	-				+0.9
2,886,512	+				-2.6
2,886,520	-				-5.5
2,886,520	-				-2.2
2,886,533	-				-3.3
2,886,663	-	cysI	b2763	0.15	-4.0
2,886,687	-	cysI	b2763	0.16	-3.1
2,886,687	-	cysI	b2763	0.16	-3.6
2,886,780	+	cysI	b2763	0.22	-1.4
2,886,780	+	cysI	b2763	0.22	-3.8
2,886,806	+	cysI	b2763	0.23	-5.3
2,886,881	-	cysI	b2763	0.28	-2.7
2,886,881	-	cysI	b2763	0.28	-3.7
2,887,065	-	cysI	b2763	0.38	-2.2
2,887,110	+	cysI	b2763	0.41	-4.7
2,887,115	-	cysI	b2763	0.41	-4.5
2,887,115	-	cysI	b2763	0.41	-3.5
2,887,203	-	cysI	b2763	0.46	-3.0
2,887,203	-	cysI	b2763	0.46	-3.3
2,887,234	-	cysI	b2763	0.48	-4.0
2,887,339	-	cysI	b2763	0.54	-2.7
2,887,339	-	cysI	b2763	0.54	-3.2
2,887,531	-	cysI	b2763	0.65	-2.0
2,887,531	-	cysI	b2763	0.65	-3.1
2,887,565	+	cysI	b2763	0.67	-1.8
2,887,565	+	cysI	b2763	0.67	-3.3
2,887,606	+	cysI	b2763	0.70	-4.9
2,887,614	-	cysI	b2763	0.70	-2.7
2,887,654	+	cysI	b2763	0.73	-4.1
2,887,657	-	cysI	b2763	0.73	-4.1
2,887,657	-	cysI	b2763	0.73	-3.9
2,887,690	-	cysI	b2763	0.75	-3.3
2,887,943	+	cysI	b2763	0.90	-3.4
2,887,943	+	cysI	b2763	0.90	-5.0
2,887,978	-				-4.9
2,887,979	-				-6.1
2,887,986	+				-4.7
2,888,091	+				-4.3
2,888,140	-				-2.2
2,888,145	-				-5.4
2,888,159	+				-3.5
2,888,159	+				-3.7
2,888,301	+	cysJ	b2764	0.10	-3.9
2,888,306	+	cysJ	b2764	0.10	-3.9
2,888,377	-	cysJ	b2764	0.14	-0.2
2,888,377	-	cysJ	b2764	0.14	-1.8
2,888,382	-	cysJ	b2764	0.14	-5.0
2,888,382	-	cysJ	b2764	0.14	-4.7
2,888,417	+	cysJ	b2764	0.16	-3.7
2,888,513	-	cysJ	b2764	0.22	-3.6
2,888,513	-	cysJ	b2764	0.22	-3.7
2,888,515	+	cysJ	b2764	0.22	-3.5
2,888,515	+	cysJ	b2764	0.22	-4.3
2,888,525	+	cysJ	b2764	0.22	-3.9
2,888,525	+	cysJ	b2764	0.22	-2.7
2,888,551	-	cysJ	b2764	0.24	-4.7
2,888,551	-	cysJ	b2764	0.24	-4.6
2,888,648	-	cysJ	b2764	0.29	-4.5
2,888,648	-	cysJ	b2764	0.29	-4.1
2,888,662	+	cysJ	b2764	0.30	-1.8
2,888,662	+	cysJ	b2764	0.30	-2.2
2,888,857	+	cysJ	b2764	0.41	-5.5
2,888,892	-	cysJ	b2764	0.43	-3.7
2,888,928	+	cysJ	b2764	0.45	-4.0
2,888,993	-	cysJ	b2764	0.48	-5.0
2,888,993	-	cysJ	b2764	0.48	-5.2
2,889,056	+	cysJ	b2764	0.52	-2.4
2,889,056	+	cysJ	b2764	0.52	-4.3
2,889,107	+	cysJ	b2764	0.55	-3.7
2,889,114	+	cysJ	b2764	0.55	-3.5
2,889,114	+	cysJ	b2764	0.55	-1.7