Strain Fitness in Escherichia coli BW25113 around b1025

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,091,116	-	ycdS	b1024	0.84	-0.6
1,091,116	-	ycdS	b1024	0.84	-0.2
1,091,128	+	ycdS	b1024	0.84	-1.1
1,091,136	-	ycdS	b1024	0.84	+0.5
1,091,136	-	ycdS	b1024	0.84	-0.3
1,091,138	-	ycdS	b1024	0.85	+0.5
1,091,138	-	ycdS	b1024	0.85	+0.5
1,091,138	-	ycdS	b1024	0.85	+0.1
1,091,138	-	ycdS	b1024	0.85	-1.0
1,091,138	-	ycdS	b1024	0.85	+0.2
1,091,153	-	ycdS	b1024	0.85	+0.1
1,091,155	+	ycdS	b1024	0.85	+0.2
1,091,155	+	ycdS	b1024	0.85	-0.2
1,091,155	+	ycdS	b1024	0.85	+1.5
1,091,155	-	ycdS	b1024	0.85	-0.2
1,091,155	-	ycdS	b1024	0.85	+0.5
1,091,161	-	ycdS	b1024	0.85	+0.4
1,091,163	-	ycdS	b1024	0.86	-0.2
1,091,163	-	ycdS	b1024	0.86	-0.4
1,091,163	-	ycdS	b1024	0.86	+0.3
1,091,163	-	ycdS	b1024	0.86	+1.5
1,091,163	-	ycdS	b1024	0.86	+0.2
1,091,163	-	ycdS	b1024	0.86	-2.2
1,091,176	+	ycdS	b1024	0.86	+0.4
1,091,176	+	ycdS	b1024	0.86	+0.0
1,091,176	+	ycdS	b1024	0.86	-0.4
1,091,177	-	ycdS	b1024	0.86	+0.6
1,091,182	+	ycdS	b1024	0.86	-1.2
1,091,182	+	ycdS	b1024	0.86	-0.0
1,091,182	+	ycdS	b1024	0.86	+0.8
1,091,182	-	ycdS	b1024	0.86	+1.3
1,091,191	-	ycdS	b1024	0.87	-0.2
1,091,195	-	ycdS	b1024	0.87	-3.2
1,091,206	+	ycdS	b1024	0.87	+0.7
1,091,206	+	ycdS	b1024	0.87	+0.0
1,091,213	+	ycdS	b1024	0.88	+0.2
1,091,213	+	ycdS	b1024	0.88	+0.9
1,091,214	-	ycdS	b1024	0.88	-1.4
1,091,223	+	ycdS	b1024	0.88	-0.1
1,091,223	+	ycdS	b1024	0.88	+0.4
1,091,233	+	ycdS	b1024	0.88	-1.1
1,091,238	+	ycdS	b1024	0.89	-0.8
1,091,238	+	ycdS	b1024	0.89	+0.5
1,091,256	+	ycdS	b1024	0.89	-0.7
1,091,263	+	ycdS	b1024	0.90	+0.2
1,091,264	-	ycdS	b1024	0.90	+1.0
1,091,283	-				+0.0
1,091,287	+				-1.5
1,091,290	-				-1.3
1,091,293	+				+0.2
1,091,301	-				+0.5
1,091,301	-				+1.4
1,091,301	-				+0.4
1,091,343	+				+0.1
1,091,353	-				-0.7
1,091,364	+				-0.8
1,091,364	+				-0.7
1,091,372	-				+2.0
1,091,405	-				+2.5
1,091,410	+				+1.2
1,091,413	-				-1.0
1,091,423	-				-0.9
1,091,425	+				-0.4
1,091,428	-				-1.1
1,091,432	+				+0.5
1,091,447	-				-0.5
1,091,511	+				+0.5
1,091,516	+				+1.0
1,091,519	-				-1.0
1,091,524	-				+1.0
1,091,528	-				+0.8
1,091,529	-				+0.5
1,091,529	-				+0.1
1,091,661	+				-0.1
1,091,661	+				+0.8
1,091,715	-				+2.0
1,091,716	+				+0.2
1,091,824	+				+2.0
1,091,832	-				+0.0
1,091,961	-				+0.5
1,091,998	+				+2.0
1,092,001	+				-2.1
1,092,004	+				-1.4
1,092,033	+				+1.5
1,092,071	+				+0.5
1,092,071	+				-0.2
1,092,074	+				+0.5
1,092,079	+				-0.8
1,092,079	+				-1.5
1,092,084	+				+0.1
1,092,086	+				+0.2
1,092,088	+				-0.1
1,092,089	+				+0.2
1,092,089	+				-1.1
1,092,089	+				+0.3
1,092,089	+				+0.0
1,092,089	+				+0.6
1,092,089	+				-0.8
1,092,097	-				-0.5
1,092,132	+				+2.0
1,092,141	+				+0.5
1,092,159	+				+2.0
1,092,222	+				+2.0
1,092,226	+				+2.0
1,093,014	-	ycdT	b1025	0.67	+1.2
1,093,052	-	ycdT	b1025	0.70	+0.0
1,093,087	-	ycdT	b1025	0.73	-1.5
1,093,168	-	ycdT	b1025	0.79	-0.3
1,093,210	+	ycdT	b1025	0.82	-1.1
1,093,210	+	ycdT	b1025	0.82	+0.5
1,093,232	+	ycdT	b1025	0.83	-1.0
1,093,312	+	ycdT	b1025	0.89	-0.1
1,093,323	+				-0.2
1,093,323	+				-0.2
1,093,323	+				+0.0
1,093,331	-				+0.5
1,093,375	+				+1.4
1,093,375	+				+0.7
1,093,379	-				+2.0
1,093,416	-				+0.0
1,093,417	-				+2.0
1,093,417	-				+0.7
1,093,419	+				-0.1
1,093,419	+				-0.1
1,093,422	+				-0.5
1,093,426	-				+1.1
1,093,427	-				-1.0
1,093,493	-				+0.5