Experiment: Ying_sugar7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroG and gpmA are separated by 157 nucleotides gpmA and galM are separated by 201 nucleotides
b0754: aroG - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI), at 784,856 to 785,908
aroG
b0755: gpmA - phosphoglyceromutase (NCBI), at 786,066 to 786,818
gpmA
b0756: galM - galactose-1-epimerase (mutarotase) (NCBI), at 787,020 to 788,060
galM
Position (kb)
786
787 Strain fitness (log2 ratio)
-1
0
1
2 at 785.161 kb on + strand, within aroG at 785.184 kb on - strand, within aroG at 785.217 kb on - strand, within aroG at 785.301 kb on + strand, within aroG at 785.497 kb on - strand, within aroG at 785.570 kb on - strand, within aroG at 785.604 kb on + strand, within aroG at 785.604 kb on + strand, within aroG at 785.612 kb on - strand, within aroG at 785.646 kb on - strand, within aroG at 785.936 kb on - strand at 785.936 kb on - strand at 785.959 kb on - strand at 785.959 kb on - strand at 785.961 kb on + strand at 785.961 kb on + strand at 786.220 kb on + strand, within gpmA at 786.277 kb on - strand, within gpmA at 786.348 kb on + strand, within gpmA at 786.350 kb on - strand, within gpmA at 786.426 kb on - strand, within gpmA at 786.426 kb on - strand, within gpmA at 786.451 kb on - strand, within gpmA at 786.477 kb on + strand, within gpmA at 786.530 kb on - strand, within gpmA at 786.531 kb on + strand, within gpmA at 786.597 kb on - strand, within gpmA at 786.597 kb on - strand, within gpmA at 786.629 kb on - strand, within gpmA at 786.666 kb on + strand, within gpmA at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.814 kb on + strand at 786.828 kb on - strand at 786.905 kb on + strand at 786.932 kb on - strand at 786.932 kb on - strand at 787.025 kb on - strand at 787.043 kb on - strand at 787.080 kb on - strand at 787.087 kb on + strand at 787.091 kb on - strand at 787.106 kb on + strand at 787.172 kb on - strand, within galM at 787.307 kb on - strand, within galM at 787.308 kb on - strand, within galM at 787.414 kb on - strand, within galM at 787.510 kb on - strand, within galM at 787.569 kb on - strand, within galM at 787.749 kb on + strand, within galM
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 1 remove 785,161 + aroG b0754 0.29 +0.5 785,184 - aroG b0754 0.31 +0.3 785,217 - aroG b0754 0.34 -0.5 785,301 + aroG b0754 0.42 +0.2 785,497 - aroG b0754 0.61 -0.4 785,570 - aroG b0754 0.68 -0.1 785,604 + aroG b0754 0.71 +0.4 785,604 + aroG b0754 0.71 -0.6 785,612 - aroG b0754 0.72 +0.1 785,646 - aroG b0754 0.75 -0.2 785,936 - -0.4 785,936 - +0.4 785,959 - -0.3 785,959 - -0.4 785,961 + +0.1 785,961 + -0.9 786,220 + gpmA b0755 0.20 -1.1 786,277 - gpmA b0755 0.28 -1.1 786,348 + gpmA b0755 0.37 -0.7 786,350 - gpmA b0755 0.38 -0.8 786,426 - gpmA b0755 0.48 -1.1 786,426 - gpmA b0755 0.48 -1.1 786,451 - gpmA b0755 0.51 -0.9 786,477 + gpmA b0755 0.55 -1.3 786,530 - gpmA b0755 0.62 -0.2 786,531 + gpmA b0755 0.62 -0.8 786,597 - gpmA b0755 0.71 -1.3 786,597 - gpmA b0755 0.71 -1.1 786,629 - gpmA b0755 0.75 -0.4 786,666 + gpmA b0755 0.80 -0.7 786,814 + -1.3 786,814 + +2.1 786,814 + -0.0 786,814 + -0.4 786,814 + -0.2 786,828 - +0.7 786,905 + -0.5 786,932 - +0.0 786,932 - +0.3 787,025 - -0.3 787,043 - -0.5 787,080 - +0.1 787,087 + -0.3 787,091 - +0.2 787,106 + -0.2 787,172 - galM b0756 0.15 -0.8 787,307 - galM b0756 0.28 -0.9 787,308 - galM b0756 0.28 -0.7 787,414 - galM b0756 0.38 +0.1 787,510 - galM b0756 0.47 -0.3 787,569 - galM b0756 0.53 -0.0 787,749 + galM b0756 0.70 +0.1
Or see this region's nucleotide sequence