Strain Fitness in Escherichia coli BW25113 around b4450

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
3,347,621	+	mtgA	b3208	0.71	-0.3
3,347,634	-	mtgA	b3208	0.73	-0.3
3,347,634	-	mtgA	b3208	0.73	-0.2
3,347,710	-	mtgA	b3208	0.83	+0.1
3,347,713	+	mtgA	b3208	0.84	+0.1
3,347,725	+	mtgA	b3208	0.85	+0.2
3,347,725	+	mtgA	b3208	0.85	-0.1
3,347,738	-	mtgA	b3208	0.87	+0.3
3,347,778	-				+0.3
3,347,820	-				-0.4
3,347,904	+	yhbL	b3209	0.12	+1.1
3,347,904	+	yhbL	b3209	0.12	+0.5
3,347,911	-	yhbL	b3209	0.13	-0.2
3,347,916	-	yhbL	b3209	0.13	+0.3
3,347,975	-	yhbL	b3209	0.22	+0.7
3,348,075	+	yhbL	b3209	0.38	+0.4
3,348,193	+	yhbL	b3209	0.56	+0.6
3,348,193	+	yhbL	b3209	0.56	+0.9
3,348,211	+	yhbL	b3209	0.59	+0.4
3,348,211	-	yhbL	b3209	0.59	-0.4
3,348,240	+	yhbL	b3209	0.63	+0.1
3,348,240	+	yhbL	b3209	0.63	-0.2
3,348,240	+	yhbL	b3209	0.63	-0.3
3,348,245	+	yhbL	b3209	0.64	-0.3
3,348,245	+	yhbL	b3209	0.64	-0.2
3,348,248	-	yhbL	b3209	0.64	+0.3
3,348,248	-	yhbL	b3209	0.64	+0.3
3,348,287	+	yhbL	b3209	0.70	-0.3
3,348,287	+	yhbL	b3209	0.70	-0.4
3,348,313	+	yhbL	b3209	0.74	+0.4
3,348,313	+	yhbL	b3209	0.74	+0.2
3,348,322	-	yhbL	b3209	0.76	+0.1
3,348,332	-	yhbL	b3209	0.77	+0.3
3,348,347	-	yhbL	b3209	0.79	-0.1
3,348,369	-	yhbL	b3209	0.83	+0.2
3,348,384	-	yhbL	b3209	0.85	-0.5
3,348,384	-	yhbL	b3209	0.85	-0.0
3,348,445	-				+0.2
3,348,450	+				-0.5
3,348,483	+				-0.5
3,348,490	+				-0.1
3,348,490	+				+0.9
3,348,493	+				-2.6
3,348,598	-				-0.0
3,348,598	-				+0.4
3,348,681	-	arcZ	b4450	0.68	+0.0
3,348,681	-	arcZ	b4450	0.68	+1.0
3,348,683	+	arcZ	b4450	0.69	+0.4
3,348,692	-	arcZ	b4450	0.77	+0.5
3,348,707	-	arcZ	b4450	0.89	-0.0
3,348,780	-				+0.4
3,348,821	+				+0.1
3,348,822	-				+1.3
3,348,836	-				+0.7
3,348,871	+				+0.4
3,349,074	+	arcB	b3210	0.16	+0.6
3,349,074	+	arcB	b3210	0.16	+0.5
3,349,074	+	arcB	b3210	0.16	+0.7
3,349,079	+	arcB	b3210	0.16	+2.2
3,349,082	-	arcB	b3210	0.16	-0.2
3,349,082	-	arcB	b3210	0.16	-0.9
3,349,089	-	arcB	b3210	0.16	-1.0
3,349,098	+	arcB	b3210	0.17	-0.4
3,349,098	-	arcB	b3210	0.17	-0.1
3,349,106	-	arcB	b3210	0.17	-0.3
3,349,106	-	arcB	b3210	0.17	-1.6
3,349,106	-	arcB	b3210	0.17	-0.8
3,349,115	-	arcB	b3210	0.17	-0.2
3,349,154	-	arcB	b3210	0.19	-0.3
3,349,180	-	arcB	b3210	0.20	-0.1
3,349,180	-	arcB	b3210	0.20	-2.0
3,349,189	+	arcB	b3210	0.20	+0.4
3,349,189	+	arcB	b3210	0.20	-0.7
3,349,298	-	arcB	b3210	0.25	-0.7
3,349,359	+	arcB	b3210	0.28	+0.2
3,349,440	+	arcB	b3210	0.31	+0.6
3,349,450	-	arcB	b3210	0.32	+0.4
3,349,540	-	arcB	b3210	0.35	-0.4
3,349,562	-	arcB	b3210	0.36	+1.0
3,349,569	+	arcB	b3210	0.37	+1.5
3,349,591	-	arcB	b3210	0.38	-0.5
3,349,639	-	arcB	b3210	0.40	-0.1